A Method for 'Connecting The Dots' in Weighted Graphs

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Documentation for package ‘CTD’ version 1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cohorts_coded	Disease cohorts with coded identifiers
data.combineData	Combine datasets
data.imputeData	Impute missing values
data.surrogateProfiles	Generate surrogate profiles
data.zscoreData	Z-transform available data
graph.connectToExt	Connect a node to its unvisited "extended" neighbors
graph.diffuseP1	Diffuse Probability P1 from a starting node
graph.diffusionSnapShot	Capture the current state of probability diffusion
graph.naivePruning	Network pruning for disease-specific network determination
graph.netWalkSnapShot	Capture the current location of a network walker
Miller2015	Miller et al. (2015)
mle.getEncodingLength	Minimum encoding length
mle.getMinPtDistance	Get minimum patient distances
mle.getPtBSbyK	Generate patient-specific bitstrings
mle.getPtDist	CTDncd: A network-based distance metric.
multiNode.getNodeRanks	Generate multi-node node rankings ("adaptive" walk)
singleNode.getNodeRanksN	Generate single-node node rankings ("fixed" walk)
stat.entropyFunction	Entropy of a bit-string
stat.fishersMethod	Fisher's Combined P-value
stat.getDirSim	DirSim: The Jaccard distance with directionality incorporated.
Thistlethwaite2020	Thistlethwaite et al. (2020)
Wangler2017	Wangler et al. (2017)