cohorts_coded |
Disease cohorts with coded identifiers |

data.combineData |
Combine datasets |

data.imputeData |
Impute missing values |

data.surrogateProfiles |
Generate surrogate profiles |

data.zscoreData |
Z-transform available data |

graph.connectToExt |
Connect a node to its unvisited "extended" neighbors |

graph.diffuseP1 |
Diffuse Probability P1 from a starting node |

graph.diffusionSnapShot |
Capture the current state of probability diffusion |

graph.naivePruning |
Network pruning for disease-specific network determination |

graph.netWalkSnapShot |
Capture the current location of a network walker |

Miller2015 |
Miller et al. (2015) |

mle.getEncodingLength |
Minimum encoding length |

mle.getMinPtDistance |
Get minimum patient distances |

mle.getPtBSbyK |
Generate patient-specific bitstrings |

mle.getPtDist |
CTDncd: A network-based distance metric. |

multiNode.getNodeRanks |
Generate multi-node node rankings ("adaptive" walk) |

singleNode.getNodeRanksN |
Generate single-node node rankings ("fixed" walk) |

stat.entropyFunction |
Entropy of a bit-string |

stat.fishersMethod |
Fisher's Combined P-value |

stat.getDirSim |
DirSim: The Jaccard distance with directionality incorporated. |

Thistlethwaite2020 |
Thistlethwaite et al. (2020) |

Wangler2017 |
Wangler et al. (2017) |