tcplAddModel |
Draw a tcpl Model onto an existing plot |
tcplAICProb |
Calculate the AIC probabilities |
tcplAppend |
Append rows to a table |
tcplCascade |
Do a cascading delete on tcpl screening data |
tcplCode2CASN |
Convert chemical code to CAS Registry Number |
tcplConf |
Functions for configuring the tcpl package |
tcplConfDefault |
Functions for configuring the tcpl package |
tcplConfExample |
Functions for configuring the tcpl package |
tcplConfList |
Functions for configuring the tcpl package |
tcplConfLoad |
Functions for configuring the tcpl package |
tcplConfReset |
Functions for configuring the tcpl package |
tcplConfSave |
Functions for configuring the tcpl package |
tcplCytoPt |
Calculate the cytotoxicity point based on the "burst" endpoints |
tcpldbStats |
Get summary statistics for the database |
tcplDefine |
Load data dictionary descriptions |
tcplDelete |
Delete rows from tcpl databases |
tcplFit |
Fit the data with the constant, hill, and gain-loss models |
tcplFit2 |
tcpl Wrapper for tcplfit2_core including additional calculations to fit into new schema |
tcplFit2_nest |
Nest dataframe into a list that is readable by tcplfit2 |
tcplFit2_unnest |
Unnest tcplfit2 parameters into a dataframe |
tcplGetAeid |
get Aeid for endpoint name |
tcplggplot |
tcplggplot |
tcplHillACXX |
Functions to solve the Hill model |
tcplHillConc |
Functions to solve the Hill model |
tcplHillVal |
Functions to solve the Hill model |
tcplHit2 |
Hitcalling with tcplfit2 |
tcplListFlds |
Load the field names for a table |
tcplLoadAcid |
Functions for loading assay information |
tcplLoadAeid |
Functions for loading assay information |
tcplLoadAid |
Functions for loading assay information |
tcplLoadAsid |
Functions for loading assay information |
tcplLoadChem |
Load sample/chemical information |
tcplLoadClib |
Load chemical library information |
tcplLoadConcUnit |
Load concentration units for assay endpoints |
tcplLoadData |
Load tcpl data |
tcplLoadUnit |
Load response units for assay endpoints |
tcplLvlCount |
Load tcpl level counts |
tcplMakeAeidMultiPlts |
Create a .pdf with all dose-response plots for a given aeid, 6 per page |
tcplMakeAeidPlts |
Create a .pdf with dose-response plots |
tcplMakeChidMultiPlts |
Create a .pdf with all dose-response plots for a given chid, 6 per page |
tcplMthdAssign |
Functions for managing processing methods |
tcplMthdClear |
Functions for managing processing methods |
tcplMthdList |
Functions for managing processing methods |
tcplMthdLoad |
Functions for managing processing methods |
tcplMultiplot |
Plot summary fits based on fit and dose-response data |
tcplObjCnst |
Model objective functions |
tcplObjGnls |
Model objective functions |
tcplObjHill |
Model objective functions |
tcplPlot |
#--- Generic Plotting Function for tcpl |
tcplPlotFitc |
Plot the fit category tree |
tcplPlotFits |
Plot summary fits based on fit and dose-response data |
tcplPlotlyPlot |
tcplPlotlyPlot |
tcplPlotM4ID |
Plot fit summary plot by m4id |
tcplPlotPlate |
Plot plate heatmap |
tcplPrepOtpt |
Map assay/chemical ID values to annotation information |
tcplQuery |
Wrappers for sending queries and fetching results |
tcplRegister |
Functions for registering & updating annotation information |
tcplRun |
Perform data processing |
tcplSendQuery |
Wrappers for sending queries and fetching results |
tcplSubsetChid |
Subset level 5 data to a single sample per chemical |
tcplUpdate |
Functions for registering & updating annotation information |
tcplVarMat |
Create chemical by assay matrices |
tcplWriteData |
Write screening data into the tcpl databases |
tcplWriteLvl0 |
Write level 0 screening data into the tcpl databases |