Pedigree Functions

Documentation for package ‘pedigree’ version 1.4.2

pedigree-package	Package to deal with pedigree data
add.Inds	Function to add missing individuals to a pedigree
blup	Function to calculate breeding values using an animal model
calcG	Function to calculate a relationship matrix from marker data (usually allele count data), G matrix.
calcInbreeding	Calculates inbreeding coefficients for individuals in a pedigree.
countGen	Count generation number for each individual in a pedigree.
countOff	Function that counts the number of offspring (and following generations for each individual in a pedigree.
gblup	Function to calculate breeding values using an animal model and a relationship matrix calculated from the markers (G matrix)
makeA	Makes the A matrix for a part of a pedigree
makeAinv	Makes inverted A matrix for a pedigree
orderPed	Orders a pedigree
pedigree	Package to deal with pedigree data
trimPed	Function to trim a pedigree based on available data