MVP |
MVP, Memory-efficient, Visualization-enhanced, Parallel-accelerated |
MVP.BRENT.Vg.Ve |
MVP.BRENT.Vg.Ve variance component estimation using the BRENT method |
MVP.calk |
Calculate Kinship matrix by Blocking strategy |
MVP.Data |
MVP.Data: To prepare data for MVP package Author: Xiaolei Liu, Lilin Yin and Haohao Zhang Build date: Aug 30, 2016 Last update: Sep 12, 2018 |
MVP.Data.Bfile2MVP |
MVP.Data.Bfile2MVP: To transform plink binary data to MVP package Author: Haohao Zhang Build date: Sep 12, 2018 |
MVP.Data.Hapmap2MVP |
MVP.Data.Hapmap2MVP: To transform Hapmap data to MVP package Author: Haohao Zhang Build date: Sep 12, 2018 |
MVP.Data.impute |
MVP.Data.impute: To impute the missing genotype Author: Haohao Zhang Build date: Sep 12, 2018 |
MVP.Data.Kin |
Kinship |
MVP.Data.Map |
MVP.Data.Map: To check map file Author: Haohao Zhang Build date: Sep 12, 2018 |
MVP.Data.MVP2Bfile |
MVP.Data.MVP2Bfile: To transform MVP data to binary format Author: Haohao Zhang Build date: Sep 12, 2018 |
MVP.Data.Numeric2MVP |
MVP.Data.Numeric2MVP: To transform Numeric data to MVP package Author: Haohao Zhang Build date: Sep 12, 2018 |
MVP.Data.PC |
Principal component analysis |
MVP.Data.Pheno |
MVP.Data.Pheno: To clean up phenotype file Author: Haohao Zhang Build date: Sep 12, 2018 |
MVP.Data.VCF2MVP |
MVP.Data.VCF2MVP: To transform vcf data to MVP package Author: Haohao Zhang Build date: Sep 12, 2018 |
MVP.EMMA.Vg.Ve |
Estimate variance components using EMMA |
MVP.FarmCPU |
Perform GWAS using FarmCPU method |
MVP.FaSTLMM.LL |
Evaluation of the maximum likelihood using FaST-LMM method |
MVP.GLM |
To perform GWAS with GLM and MLM model and get the P value of SNPs |
MVP.HE.Vg.Ve |
To estimate variance component using HE regression |
MVP.Hist |
Phenotype distribution histogram |
MVP.K.VanRaden |
Calculate Kinship matrix by VanRaden method |
MVP.MLM |
To perform GWAS with GLM and MLM model and get the P value of SNPs |
MVP.PCA |
Principal Component Analysis |
MVP.PCAplot |
PCA Plot |
MVP.Report |
MVP.Report |
MVP.Report.Density |
SNP Density |
MVP.Report.QQplot |
QQ Plot |
MVP.Version |
Print MVP Banner |
pig60K |
Genotyped by pig 60k chip |