Scan Pairwise Epistasis

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Documentation for package ‘episcan’ version 0.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

checkchunksize	Check chunk size
epiblaster1geno	Parallelized calculation of the difference of correlation coefficients and compute Z test with one genotype input
epiblaster2genos	Parallelized calculattion of the difference of correlation coefficients and compute Z test with two genotype inputs
epiHSIC	Calculate HSIC values
epiHSIC1geno	Calculate epistasis using HSIC with one genotype input
epiHSIC2genos	Calculate epistasis using HSIC with two genotype inputs
episcan	Scan pairwise epistasis
getcor	Get correlation matrix
ithChunk	index set for idx-th chunk of size chunk for n elements
WriteSnpPairs	Write out epistasis result (normal matrix)
WriteSnpPairs_sym	Write out epistasis result (symmetric matrix)
ZtoP	Convert Z-score to correponding p-value