Quantification of Fate Bias in Multipotent Progenitors

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Documentation for package ‘FateID’ version 0.2.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

compdr	Computation of dimensional reduction representations
diffexpnb	Function for differential expression analysis
fateBias	Computation of fate bias
filterset	Function for filtering expression data
gene2gene	Comparative plot of the expression levels of two genes
getFeat	Feature selection based on differentially expressed genes
getPart	Inference of a cell type partition
getsom	Topological ordering of pseudo-temporal expression profiles
impGenes	Extract genes with high importance values for random forest classification
intestine	Single-cell transcriptome data of intestinal epithelial cells
plotdiffgenesnb	Function for plotting differentially expressed genes
plotexpression	Plotting of pseudo-temporal expression profiles
plotexpressionProfile	Plotting smoothed pseudo-temporal expression profiles for groups of genes
plotFateMap	Plot dimensional reduction representation of the expression data
plotheatmap	Heatmap of expression profiles
prcurve	Computation of a principal curve for a given dimensional reduction representation
procsom	Processing of self-organizing maps for pseudo-temporal expression profiles
reclassify	Reclassification of cells