An R Interface to Open-Access Malaria Data, Hosted by the 'Malaria Atlas Project'

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Documentation for package ‘malariaAtlas’ version 1.6.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as.MAPraster	Convert Raster objects into MAPraster objects
as.MAPshp	Convert SpatialPolygon objects into MAPshp objects
as.pr.points	Convert data.frames to pr.points objects.
as.vectorpoints	Convert data.frames to vector.points objects.
autoplot.MAPraster	Quickly visualise Rasters downloaded from MAP
autoplot.MAPshp	Create a basic plot to visualise downloaded shapefiles
autoplot.pr.points	Create a basic plot showing locations of downloaded PR points
autoplot.sf	Create a basic plot to visualise downloaded shapefiles
autoplot.SpatRaster	Quickly visualise Rasters downloaded from MAP
autoplot.SpatRasterCollection	Quickly visualise Rasters downloaded from MAP
autoplot.vector.points	Create a basic plot showing locations of downloaded Vector points
autoplot_MAPraster	Quickly visualise Rasters downloaded from MAP
convertPrevalence	convert prevalences from one age range to another
download_rst	Download rasters from the MAP geoserver to a specifed location. If file already exists it will read it instead.
extractRaster	Extract pixel values from MAP rasters using point coordinates.
fillDHSCoordinates	Add DHS locations to malaria data
getPR	Download PR points from the MAP database
getRaster	Download Rasters produced by the Malaria Atlas Project
getShp	Download MAPadmin2013 Administrative Boundary Shapefiles from the MAP geoserver
getSpBbox	Return sp style bbox
getVecOcc	Download Vector Occurrence points from the MAP database 'getVecOcc' downloads all publicly available vector occurrence points for a specified country (or countries) and returns this as a dataframe. 'country' and 'ISO' refer to countries and a lower-level administrative regions such as French Guiana.
isAvailable	Available data to download from the MAP geoserver.
isAvailable_pr	Check whether PR points are available for a given location
isAvailable_vec	Check whether Vector Occurrence points are available for a given location
isMaskedRaster	Returns true if second band of raster is a mask
listData	Deprecated function. Please instead use listPRPointCountries for pr points, listVecOccPointCountries for vector points, listRaster for raster and listShp for shape.
listPoints	Deprecated function. Please instead use listPRPointCountries for pr points, and listVecOccPointCountries for vector points
listPRPointCountries	List countries where there is pr point data available
listPRPointVersions	List all dataset versions from the Web Feature Services provided by the Malaria Atlas Project within the Parasite Rate workspace.
listRaster	List all MAP Rasters available to download.
listShp	List administrative units for which shapefiles are stored on the MAP geoserver.
listShpVersions	List all versions of admin unit shapes from the Web Feature Services provided by the Malaria Atlas Project within the Admin Units workspace.
listSpecies	list all species which have occurrence data within the MAP database.
listVecOccPointCountries	List countries where there is vector occurrence point data available
listVecOccPointVersions	List all dataset versions from the Web Feature Services provided by the Malaria Atlas Project within the Vector Occurrence workspace.
makeSpatRasterAutoplot	Create a single (sub) plot for a SpatRaster
malariaAtlas	An R interface to open-access malaria data, hosted by the Malaria Atlas Project.