Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE)

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Documentation for package ‘meteR’ version 1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

meteR-package	Analyses with the Maximum Entropy Theory of Ecology (METE)
anbo	Community abundance data for a desert grassland (anza borrego)
arth	Arthropod community abundance data
downscaleSAR	Downscale the species area relationship (SAR) or endemics area relationship (EAR)
ebar	Relationship between mean metabolic rate (\bar{epsilon}) and abundance
empiricalSAR	Empirical SAR or EAR
ipd	Individual Power Distribution
ipd.meteESF	Individual Power Distribution
logLik.meteDist	Compute log-likelihood of a meteDist object
logLikZ	Compute log-likelihood z-score
logLikZ.meteDist	Compute log-likelihood z-score
meteDist2Rank	meteDist2Rank
meteESF	meteESF
meteNu	Equation of the PMF for the METE species metabolic rate distribution
metePhi	Equation of the METE species abundance distribution
metePi	Equation of the PMF of the METE spatial species abundance distribution
metePsi	Equation of the PMF for the METE individual metabolic rate distribution
meteR	Analyses with the Maximum Entropy Theory of Ecology (METE)
meteSAR	Compute METE species area relationship (SAR)
meteSSF	meteSSF
meteTheta	Equation of the PMF for the METE Intra-specific metabolic rate distribution
mse	Computes mean squared error for rank or cdf
mse.meteDist	Computes mean squared error for rank or cdf
mseZ	Compute z-score of mean squared error
mseZ.meteDist	Compute z-score of mean squared error
plot.damuth	Plot the relationship between abundance and metabolic rate, i.e. objects of class damuth
plot.meteDist	Plot METE distributions and associated data
plot.meteRelat	Plot predicted METE relationships and associated observed relationship seen in data
plot.sar	Plot the species abundance distribution (SAR), i.e. objects of class sar
predictESF	predictESF
print.damuth	print.damuth
print.meteDist	Print summaries of 'meteDist' objects
print.meteESF	print.meteESF
print.meteRelat	Print summaries of 'meteRelat' objects
print.sar	print.sar
residuals.meteDist	Compute residuals between METE predictions and data of a meteDist object
residuals.meteRelat	Compute residuals between METE predictions and date of a meteRelat object
sad	METE species abundance distribution
sad.meteESF	METE species abundance distribution
sipd	Generic method to obtain the species-level individual power distribution (SIPD)
sipd.meteESF	Generic method to obtain the species-level individual power distribution (SIPD)
spd	Species Power Distribution
spd.meteESF	Species Power Distribution
ssad	Species Spatial Abundance Distribution
ssad.meteSSF	Species Spatial Abundance Distribution
upscaleSAR	upscale SAR