as.data.frame.TP |
Coerce TP object to data.frame |
countValid |
Count valid observations per time point for a given trait |
countValidPlot |
Count valid observations per plotId for a given trait |
createTimePoints |
Create an object of class TP |
detectSerieOut |
Detect outliers for series of observations |
detectSingleOut |
Detect outliers for single observations |
detectSingleOutMaize |
detectSingleOutMaize |
estimateSplineParameters |
Extract estimates from fitted splines. |
fitModels |
Fit spatial models per time point |
fitSpline |
Fit Splines |
fitSplineHDM |
Fit P-Spline Hierarchical Curve Data Models |
getCorrected |
Extract corrected phenotypic values |
getEffDims |
Extract effective dimensions |
getGenoPred |
Extract predicted genotypic values |
getHerit |
Extract heritabilities |
getTimePoints |
Extract time points |
getVar |
Extract variances |
noCorrectedRoot |
Root data corrected for outliers for single observations. |
PhenoarchDat1 |
Greenhouse data for a maize experiment in the PhenoArch platform. |
PhenovatorDat1 |
Growth chamber data for an Arabidopsis experiment in the Phenovator platform. |
plot.fitMod |
Plot function for class fitMod |
plot.HTPSpline |
Plot the results of a fitted spline. |
plot.psHDM |
Plot function for class psHDM |
plot.serieOut |
Plot outliers for series of observations |
plot.singleOut |
Plot outliers for single observations |
plot.splineEst |
Plot the results of estimated spline parameters. |
plot.TP |
Plot function for class TP |
predict.psHDM |
Predict the P-Splines Hierarchical Curve Data Model |
removeSerieOut |
Replace outliers for series of observations by NA |
removeSingleOut |
Replace outliers for single observations by NA |
removeTimePoints |
Remove time points from an object of class TP |
RootDat1 |
Greenhouse data for an experiment in the RootPhAir platform. |
spatCorrectedArch |
Maize data corrected for spatial trends. |
spatCorrectedVator |
Arabidopsis data corrected for spatial trends. |
spatPredArch |
Maize data, genotypic predictions. |
summary.fitMod |
Summary function for fitMod objects |
summary.TP |
Summary function for TP objects |