Record Linkage and Epidemiological Case Definitions in R


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Documentation for package ‘diyar’ version 0.4.1

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A C D E F H I L M N O P R S U W X Y misc

-- A --

across Overlapping number line objects
aligns_end Overlapping number line objects
aligns_start Overlapping number line objects
as.data.frame.d_report d_report
as.data.frame.epid 'epid' object
as.data.frame.number_line 'number_line' object
as.data.frame.pane 'pane' object
as.data.frame.pid 'pid' objects
as.epid 'epid' object
as.list.d_report d_report
as.list.epid 'epid' object
as.list.number_line 'number_line' object
as.list.pane 'pane' object
as.list.pid 'pid' objects
as.number_line 'number_line'
as.pane 'pane' object
as.pid 'pid' objects
attrs Sub-criteria
attr_eval Sub-criteria attributes.

-- C --

c-method 'epid' object
c-method 'number_line' object
c-method 'pane' object
c-method 'pid' objects
chain Overlapping number line objects
combi Vector combinations
custom_sort Nested sorting

-- D --

decode Labelling in 'diyar'
decode.default Labelling in 'diyar'
decode.d_label Labelling in 'diyar'
delink Unlink group identifiers
delink.epid Unlink group identifiers
delink.pane Unlink group identifiers
delink.pid Unlink group identifiers
d_report d_report

-- E --

encode Labelling in 'diyar'
encode.default Labelling in 'diyar'
encode.d_label Labelling in 'diyar'
end_point 'number_line'
end_point<- 'number_line'
epid-class 'epid' object
epid_lengths Windows and lengths
epid_windows Windows and lengths
episodes Link events to chronological episodes.
episodes_wf_splits Track episodes in a reduced dataset.
episode_group Link events to chronological episodes.
episode_unit Datasets in 'diyar' package
eval_sub_criteria Evaluate a 'sub_criteria'.
eval_sub_criteria.sub_criteria Evaluate a 'sub_criteria'.
exact Overlapping number line objects
exact_match Predefined logical tests in *'diyar'*
exclude_overlap_method Overlapping number line objects
expand_number_line 'number_line'

-- F --

fixed_episodes Link events to chronological episodes.
format.epid 'epid' object
format.number_line 'number_line' object
format.pane 'pane' object
format.pid 'pid' objects

-- H --

hospital_admissions Datasets in 'diyar' package
hourly_data Datasets in 'diyar' package

-- I --

inbetween Overlapping number line objects
include_overlap_method Overlapping number line objects
index_window Windows and lengths
infections Datasets in 'diyar' package
infections_2 Datasets in 'diyar' package
infections_3 Datasets in 'diyar' package
infections_4 Datasets in 'diyar' package
intersect_number_lines Set operations on number line objects
invert_number_line 'number_line'
is.epid 'epid' object
is.number_line 'number_line'
is.pane 'pane' object
is.pid 'pid' objects

-- L --

left_point 'number_line'
left_point<- 'number_line'
links Multistage deterministic record linkage
links_wf_probabilistic Record linkage
link_records Record linkage
listr Grammatical lists.

-- M --

make_ids Convert and edge list to record identifiers.
make_pairs Record-pair combination.
make_pairs_wf_source Record-pair combination.
merge_identifiers Merge group identifiers
merge_ids Merge group identifiers
merge_ids.default Merge group identifiers
merge_ids.epid Merge group identifiers
merge_ids.pane Merge group identifiers
merge_ids.pid Merge group identifiers
missing_staff_id Datasets in 'diyar' package

-- N --

number_line 'number_line'
number_line-class 'number_line' object
number_line_sequence 'number_line'
number_line_width 'number_line'

-- O --

Opes Datasets in 'diyar' package
overlap Overlapping number line objects
overlaps Overlapping number line objects
overlap_method Overlapping number line objects
overlap_methods Datasets in 'diyar' package
overlap_method_codes Overlapping number line objects
overlap_method_names Overlapping number line objects

-- P --

pane-class 'pane' object
partitions Distribute events into specified intervals.
patient_list Datasets in 'diyar' package
patient_list_2 Datasets in 'diyar' package
pid-class 'pid' objects
plot.d_report d_report
predefined_tests Predefined logical tests in *'diyar'*
print.epid_summary 'epid' object
print.pane_summary 'pane' object
print.pid_summary 'pid' objects
prob_link Predefined logical tests in *'diyar'*
prob_score_range Record linkage

-- R --

range_match Predefined logical tests in *'diyar'*
range_match_legacy Predefined logical tests in *'diyar'*
record_group Multistage deterministic record linkage
reframe Modify 'sub_criteria' objects
reframe.sub_criteria Modify 'sub_criteria' objects
rep-method 'epid' object
rep-method 'number_line' object
rep-method 'pane' object
rep-method 'pid' objects
rep.d_label Labelling in 'diyar'
reverse Overlapping number line objects
reverse_number_line 'number_line'
right_point 'number_line'
right_point<- 'number_line'
rolling_episodes Link events to chronological episodes.

-- S --

schema Schema diagram for linked records in 'diyar'
schema.epid Schema diagram for linked records in 'diyar'
schema.number_line Schema diagram for linked records in 'diyar'
schema.pane Schema diagram for linked records in 'diyar'
schema.pid Schema diagram for linked records in 'diyar'
seq.number_line 'number_line' object
set_operations Set operations on number line objects
shift_number_line 'number_line'
show-method 'epid' object
show-method 'number_line' object
show-method 'pane' object
show-method 'pid' objects
sort.number_line 'number_line' object
staff_records Datasets in 'diyar' package
start_point 'number_line'
start_point<- 'number_line'
subtract_number_lines Set operations on number line objects
sub_criteria Sub-criteria
summary.epid 'epid' object
summary.pane 'pane' object
summary.pid 'pid' objects

-- U --

union_number_lines Set operations on number line objects
unique.epid 'epid' object
unique.number_line 'number_line' object
unique.pane 'pane' object
unique.pid 'pid' objects

-- W --

windows Windows and lengths

-- X --

x_across_y Overlapping number line objects
x_chain_y Overlapping number line objects
x_inbetween_y Overlapping number line objects

-- Y --

y_across_x Overlapping number line objects
y_chain_x Overlapping number line objects
y_inbetween_x Overlapping number line objects

-- misc --

$-method 'number_line' object
$<--method 'number_line' object
[-method 'epid' object
[-method 'number_line' object
[-method 'pane' object
[-method 'pid' objects
[.d_label Labelling in 'diyar'
[<--method 'number_line' object
[[-method 'epid' object
[[-method 'number_line' object
[[-method 'pane' object
[[-method 'pid' objects
[[.d_label Labelling in 'diyar'
[[<--method 'number_line' object