Record Linkage and Epidemiological Case Definitions in 'R'

Documentation for package ‘diyar’ version 0.5.1

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-- A --

across	Overlapping number line objects
aligns_end	Overlapping number line objects
aligns_start	Overlapping number line objects
as.data.frame.d_report	d_report
as.data.frame.epid	'epid' object
as.data.frame.number_line	'number_line' object
as.data.frame.pane	'pane' object
as.data.frame.pid	'pid' objects
as.epid	'epid' object
as.list.d_report	d_report
as.list.epid	'epid' object
as.list.number_line	'number_line' object
as.list.pane	'pane' object
as.list.pid	'pid' objects
as.number_line	'number_line'
as.pane	'pane' object
as.pid	'pid' objects
attrs	Match criteria
attr_eval	Sub-criteria attributes.

-- B --

bys_count	Vectorised approach to group operations.
bys_cummax	Vectorised approach to group operations.
bys_cummin	Vectorised approach to group operations.
bys_cumprod	Vectorised approach to group operations.
bys_cumsum	Vectorised approach to group operations.
bys_funcs	Vectorised approach to group operations.
bys_lag	Vectorised approach to group operations.
bys_lead	Vectorised approach to group operations.
bys_max	Vectorised approach to group operations.
bys_min	Vectorised approach to group operations.
bys_nval	Vectorised approach to group operations.
bys_position	Vectorised approach to group operations.
bys_prod	Vectorised approach to group operations.
bys_rank	Vectorised approach to group operations.
bys_sum	Vectorised approach to group operations.
bys_val	Vectorised approach to group operations.

-- C --

c-method	'epid' object
c-method	'number_line' object
c-method	'pane' object
c-method	'pid' objects
chain	Overlapping number line objects
combi	Vector combinations
custom_sort	Nested sorting

-- D --

-- E --

encode	Labelling in 'diyar'
encode.default	Labelling in 'diyar'
encode.d_label	Labelling in 'diyar'
end_point	'number_line'
end_point<-	'number_line'
epid-class	'epid' object
epid_lengths	Windows and lengths
epid_windows	Windows and lengths
episodes	Group dated events into episodes.
episodes_af_shift	Group dated events into episodes.
episodes_wf_splits	Link events to chronological episodes.
episode_unit	Datasets in 'diyar' package
eval_sub_criteria	Match criteria
eval_sub_criteria.sub_criteria	Match criteria
exact	Overlapping number line objects
exact_match	Predefined logical tests in 'diyar'
exclude_overlap_method	Overlapping number line objects
expand_number_line	'number_line'

-- F --

false	Predefined logical tests in 'diyar'
format.epid	'epid' object
format.number_line	'number_line' object
format.pane	'pane' object
format.pid	'pid' objects
format.sub_criteria	Match criteria

-- H --

hospital_admissions	Datasets in 'diyar' package
hourly_data	Datasets in 'diyar' package

-- I --

inbetween	Overlapping number line objects
include_overlap_method	Overlapping number line objects
index_window	Windows and lengths
infections	Datasets in 'diyar' package
infections_2	Datasets in 'diyar' package
infections_3	Datasets in 'diyar' package
infections_4	Datasets in 'diyar' package
intersect_number_lines	Set operations on number line objects
invert_number_line	'number_line'
is.epid	'epid' object
is.number_line	'number_line'
is.pane	'pane' object
is.pid	'pid' objects

-- L --

left_point	'number_line'
left_point<-	'number_line'
links	Multistage record linkage
links_af_probabilistic	Record linkage
links_wf	Record linkage
links_wf_episodes	Group dated events into episodes.
links_wf_probabilistic	Record linkage
link_wf	Record linkage
listr	Grammatical lists.

-- M --

make_episodes	Create 'epid' and 'pid' objects with index of matching records
make_ids	Convert an edge list to record identifiers.
make_pairs	Combinations and permutations of record-sets.
make_pairs_wf_source	Combinations and permutations of record-sets.
make_pids	Create 'epid' and 'pid' objects with index of matching records
make_s4_ids	Create 'epid' and 'pid' objects with index of matching records
make_sets	Combinations and permutations of record-sets.
merge_identifiers	Merge group identifiers
merge_ids	Merge group identifiers
merge_ids.default	Merge group identifiers
merge_ids.epid	Merge group identifiers
merge_ids.pane	Merge group identifiers
merge_ids.pid	Merge group identifiers
missing_staff_id	Datasets in 'diyar' package

-- N --

none	Overlapping number line objects
number_line	'number_line'
number_line-class	'number_line' object
number_line_sequence	'number_line'
number_line_width	'number_line'

-- O --

Opes	Datasets in 'diyar' package
overlap	Overlapping number line objects
overlaps	Overlapping number line objects
overlap_method	Overlapping number line objects
overlap_methods	Datasets in 'diyar' package
overlap_method_codes	Overlapping number line objects
overlap_method_names	Overlapping number line objects

-- P --

pane-class	'pane' object
partitions	Distribute events into specified intervals.
patient_list	Datasets in 'diyar' package
patient_list_2	Datasets in 'diyar' package
patient_records	Datasets in 'diyar' package
pid-class	'pid' objects
plot.d_report	d_report
predefined_tests	Predefined logical tests in 'diyar'
print.epid_summary	'epid' object
print.pane_summary	'pane' object
print.pid_summary	'pid' objects
print.sub_criteria	Match criteria
prob_link	Predefined logical tests in 'diyar'
prob_score_range	Record linkage

-- R --

range_match	Predefined logical tests in 'diyar'
reframe	Modify 'sub_criteria' objects
reframe.sub_criteria	Modify 'sub_criteria' objects
rep-method	'epid' object
rep-method	'number_line' object
rep-method	'pane' object
rep-method	'pid' objects
rep.d_label	Labelling in 'diyar'
reverse_number_line	'number_line'
right_point	'number_line'
right_point<-	'number_line'

-- S --

schema	Schema diagram for group identifiers
schema.epid	Schema diagram for group identifiers
schema.number_line	Schema diagram for group identifiers
schema.pane	Schema diagram for group identifiers
schema.pid	Schema diagram for group identifiers
seq.number_line	'number_line' object
sets	Combinations and permutations of record-sets.
set_operations	Set operations on number line objects
shift_number_line	'number_line'
show-method	'epid' object
show-method	'number_line' object
show-method	'pane' object
show-method	'pid' objects
sort.number_line	'number_line' object
staff_records	Datasets in 'diyar' package
start_point	'number_line'
start_point<-	'number_line'
subtract_number_lines	Set operations on number line objects
sub_criteria	Match criteria
summary.epid	'epid' object
summary.pane	'pane' object
summary.pid	'pid' objects

-- T --

true	Predefined logical tests in 'diyar'

-- U --

union_number_lines	Set operations on number line objects
unique.epid	'epid' object
unique.number_line	'number_line' object
unique.pane	'pane' object
unique.pid	'pid' objects

-- W --

Windows and lengths

-- X --

x_across_y	Overlapping number line objects
x_aligns_end_y	Overlapping number line objects
x_aligns_start_y	Overlapping number line objects
x_chain_y	Overlapping number line objects
x_inbetween_y	Overlapping number line objects

-- Y --

y_across_x	Overlapping number line objects
y_aligns_end_x	Overlapping number line objects
y_aligns_start_x	Overlapping number line objects
y_chain_x	Overlapping number line objects
y_inbetween_x	Overlapping number line objects

-- misc --