castAsInteger |
Helper function to cast variables as integers. |
castListAsInteger |
Helper function to cast list as integer |
chmAdd |
Add a list of objects to a NGCHM. |
chmAdd-method |
Add a list of objects to a NGCHM. |
chmAddAxisType |
Add an axis type to a NGCHM. |
chmAddAxisType-method |
Add an axis type to a NGCHM. |
chmAddColormap |
Add a colormap to a NGCHM. |
chmAddColormap-method |
Add a colormap to a NGCHM. |
chmAddCovariate |
Add a covariate to an auxiliary dataset. |
chmAddCovariate-method |
Add a covariate to an auxiliary dataset. |
chmAddCovariateBar |
Add a covariate bar to a NGCHM. |
chmAddCovariateBar-method |
Add a covariate bar to a NGCHM. |
chmAddCSS |
Add custom CSS to a NGCHM. |
chmAddCSS-method |
Add custom CSS to a NGCHM. |
chmAddDataset |
Add an auxiliary dataset to a NGCHM. |
chmAddDataset-method |
Add an auxiliary dataset to a NGCHM. |
chmAddDialog |
Add an extra dialog to a NGCHM. |
chmAddDialog-method |
Add an extra dialog to a NGCHM. |
chmAddLayer |
Add a Layer to a NGCHM. |
chmAddLayer-method |
Add a Layer to a NGCHM. |
chmAddMenuItem |
Add a menu entry to a NGCHM. |
chmAddMenuItem-method |
Add a menu entry to a NGCHM. |
chmAddMetaData |
Add MetaData to NG-CHM |
chmAddMetaData-method |
Add MetaData to NG-CHM |
chmAddOverview |
Generate an overview image of the NGCHM when making it. |
chmAddOverview-method |
Generate an overview image of the NGCHM when making it. |
chmAddPCA |
Add PCA coordinates to an NG-CHM. |
chmAddProperty |
Add custom property to a NGCHM. |
chmAddProperty-method |
Add custom property to a NGCHM. |
chmAddReducedDim |
Add reduced dimension coordinates to an NG-CHM. |
chmAddRelated |
Add a link to related information to the NGCHM. |
chmAddRelated-method |
Add a link to related information to the NGCHM. |
chmAddRelatedGroup |
Add a group of related links to the NGCHM. |
chmAddRelatedGroup-method |
Add a group of related links to the NGCHM. |
chmAddSpecificAxisTypeFunction |
Add a CHM-specific axis type function to a NGCHM. |
chmAddSpecificAxisTypeFunction-method |
Add a CHM-specific axis type function to a NGCHM. |
chmAddTag |
Add tags to a NGCHM. |
chmAddTag-method |
Add tags to a NGCHM. |
chmAddTemplate |
Add a file template to the NGCHM. |
chmAddTemplate-method |
Add a file template to the NGCHM. |
chmAddToolboxR |
Add standard toolbox to an NG-CHM axis |
chmAddToolboxR-method |
Add standard toolbox to an NG-CHM axis |
chmAddToolboxR2 |
Add Toolbox R2 to NG-CHM |
chmAddToolboxR2-method |
Add Toolbox R2 to NG-CHM |
chmAddToolboxRC |
Add Toolbox RC to NG-CHM |
chmAddToolboxRC-method |
Add Toolbox RC to NG-CHM |
chmAddTSNE |
Add TSNE coordinates to an NG-CHM. |
chmAddUMAP |
Add UMAP coordinates to an NG-CHM. |
chmAddUWOT |
Add UWOT::UMAP coordinates to an NG-CHM. |
chmAxis |
Create a new Axis for adding to an NG-CHM. |
chmAxisType |
Create a new AxisType for adding to an ngchmAxis. |
chmBindFunction |
Bind values to an existing JS function. |
chmBindFunction-method |
Bind values to an existing JS function. |
chmBrowse |
Browse the NGCHMs on the specified server in the viewer. |
chmColOrder<- |
Set the column order of data shown in a NGCHM. |
chmColOrder<--method |
Set the column order of data shown in a NGCHM. |
chmColorMap |
Get the color map of an NG-CHM object. |
chmColorMap<- |
Set the color map of an NG-CHM object |
chmColors |
Get the colors of an ngchmColormap, ngchmLayer, ngchmBar, or ngchmCovariate. |
chmColors<- |
Set the colors of an ngchmColormap, ngchmLayer, ngchmBar, or ngchmCovariate. |
chmCovariate |
Get a covariate attached to an NG-CHM dataset. |
chmCovariateBar |
Get a covariate bar attached to an NG-CHM. |
chmCreateCollection |
Create a new NG-CHM Collection |
chmCreateManagedServer |
Create an ngchmServer object for a managed NG-CHM server |
chmCreateServer |
Create an ngchmServer object from a specification. |
chmCurrentCollection |
Get the user's current collection |
chmCurrentServer |
Get the user's current server |
chmDefaultColOrder |
Return default column order of an NGCHM |
chmDefaultRowOrder |
Return default row order of an NGCHM |
chmDeployServer |
Get the name of a NGCHM server. |
chmDeployServer-method |
Get the name of a NGCHM server. |
chmExportToFile |
Export a standalone NGCHM to a file. |
chmExportToHTML |
Export a standalone HTML containing the NGCHM to a file. |
chmExportToPDF |
Export a PDF of the NGCHM to a file. |
chmFieldAccessFunction |
Get Javascript function name for accessing a specific string field in each element of string vector. |
chmGetDataset |
Get the dataset from an NG-CHM object |
chmGetDataset-method |
Get the dataset from an NG-CHM object |
chmGetDeployServerConfig |
Get per-user configuration for a specific deploy Server. |
chmGetFunction |
Get a predefined Javascript function for use in NGCHM menus |
chmGetOverview |
Get the file path to the specified overview file. |
chmGetProperty |
Get Property from NG-CHM |
chmGetProperty-method |
Get Property from NG-CHM |
chmGetTypeInfo |
Get information about a type name. |
chmGetURL |
Get the URL for an installed NGCHM. |
chmGetURL-method |
Get the URL for an installed NGCHM. |
chmHasProperty |
Determine if the NG-CHM has the given property. |
chmHasProperty-method |
Determine if the NG-CHM has the given property. |
chmInstall |
Add an NG-CHM to an NG-CHM collection. |
chmInstall-method |
Add an NG-CHM to an NG-CHM collection. |
chmLabel |
Get the label/name of an NG-CHM object. |
chmLabel<- |
Set the label/name of an NG-CHM object |
chmLayer |
Get a specified Data Layer from an NG-CHM. |
chmLayer<- |
Set (or append) a specified Data Layer in an NG-CHM. |
chmListFunctions |
List the predefined Javascript functions available for use in NGCHM menus. |
chmListServers |
List NG-CHM Servers |
chmListTypes |
List known axis types. |
chmLoadCHM |
Load CHM from NG-CHM server |
chmLoadCHM-method |
Load CHM from NG-CHM server |
chmLoadShaidyCHM |
Load an NG-CHM from an NG-CHM server. |
chmMake |
Compile a NGCHM. |
chmMake-method |
Compile a NGCHM. |
chmMakePrivate |
Make NG-CHM Private on Server |
chmMakePrivate-method |
Make NG-CHM Private on Server |
chmMakePublic |
Make NG-CHM Public on Server |
chmMakePublic-method |
Make NG-CHM Public on Server |
chmManager |
Open the NG-CHM Manager |
chmName |
Get the name of a NGCHM. |
chmName-method |
Get the name of a NGCHM. |
chmNew |
Create a new NGCHM. |
chmNewColorMap |
Create a new Color Map for use in constructing a NGCHM |
chmNewCovariate |
Create a new Covariate for adding to an NGCHM auxilary dataset. |
chmNewCovariateBar |
Create a new covariate Bar for a NGCHM |
chmNewDataLayer |
Create a new Data Layer for a NGCHM. |
chmNewDataset |
Create a new Dataset for a NGCHM. |
chmNewDialog |
Create a new Dialog for a NGCHM. |
chmNewFunction |
Create a new Javascript function for adding to a NGCHM menu. |
chmNewProperty |
Create a new Property for adding to a NGCHM. |
chmNewServer |
Create a new object representing a NGCHM server. |
chmOriginalColOrder |
Return original column order of an NGCHM |
chmOriginalRowOrder |
Return original row order of an NGCHM |
chmProperties |
Create NG-CHM Properties |
chmProperty |
Get the value of an NG-CHM property. |
chmProperty<- |
Set the value of an NG-CHM property. |
chmRandomColOrder |
Return random column order of an NGCHM |
chmRandomRowOrder |
Return random row order of an NGCHM |
chmRegisterAxisFunction |
Register a predefined Javascript function for use in NGCHM Axis menus. |
chmRegisterFunction |
Register a predefined Javascript function for use in NGCHM menus. |
chmRegisterGetMetadataFunction |
Define and register a Javascript function for obtaining a specific metadata value. |
chmRegisterMatrixFunction |
Register a predefined Javascript function for use in NGCHM Matrix menus. |
chmRegisterToolboxFunction |
Register a Javascript function for use in the NGCHM toolbox. |
chmRegisterType |
Register a type name. |
chmRegisterTypeMapper |
Register a predefined Javascript function for converting values from one type to another. |
chmRegisterTypeSplitter |
Define and register a Javascript function for converting a lists of type values into single values. |
chmRowOrder<- |
Set the row order of data shown in a NGCHM. |
chmRowOrder<--method |
Set the row order of data shown in a NGCHM. |
chmServer |
Get a registered ngchmServer object for use in making and installing NGCHMs |
chmSetCollection |
Set the user's current server and/or collection |
chmSetCredentials |
Set Access Credentials for NG-CHM Server |
chmSetCredentials-method |
Set Access Credentials for NG-CHM Server |
chmSetDeployServerConfig |
Specify per-user configuration for a specific deploy Server. |
chmStringopFunction |
Get Javascript function name for performing a specific string operation on each element of a string vector. |
chmTreeGaps |
Creates new treeCuts object |
chmUninstall |
Remove an NG-CHM from Server |
chmUninstall-method |
Remove an NG-CHM from Server |
chmUrlBase |
Get the base URL for a NGCHM installed on a NGCHM server. |
chmUrlBase-method |
Get the base URL for a NGCHM installed on a NGCHM server. |
chmWriteCustomJS |
Output Javascript code required to customize an NGCHM. |