Predicting Disease Spread from Flow Data


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Documentation for package ‘epiflows’ version 0.2.1

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add_coordinates Add/Retrieve location coordinates
as.SpatialLinesDataFrame Convert to SpatialLinesDataFrame class
as.SpatialLinesDataFrame.epiflows Convert to SpatialLinesDataFrame class
Brazil_epiflows Yellow Fever Data from Brazil; 2016-12 to 2017-05
epiflows epiflows
epiflows.vars Epiflow Global Variables
estimate_risk_spread Travel-related disease cases spreaded to other locations from an infectious location
estimate_risk_spread.default Travel-related disease cases spreaded to other locations from an infectious location
estimate_risk_spread.epiflows Travel-related disease cases spreaded to other locations from an infectious location
get_coordinates Add/Retrieve location coordinates
get_coordinates.epiflows Add/Retrieve location coordinates
get_flows Access flow data
get_flows.epiflows Access flow data
get_id Access population identifiers in epiflows objects
get_locations Access flow data
get_locations.epiflows Access flow data
get_n get the number of cases per flow
get_n.epiflows get the number of cases per flow
get_pop_size Get population size for each entry in locations
get_pop_size.epiflows Get population size for each entry in locations
get_vars Access location metadata
get_vars.epiflows Access location metadata
global_vars Epiflow Global Variables
grid_epiflows Visualise epidemic flows using a grid
make_epiflows Create an epiflows object
make_epiflows.data.frame Create an epiflows object
make_epiflows.integer Create an epiflows object
make_epiflows.numeric Create an epiflows object
map_epiflows Map flows of people between locations
plot.epiflows Various plots for epiflows objects
print.epiflows Print method from epiflows objects
set_vars Access location metadata
set_vars.epiflows Access location metadata
set_vars<- Access location metadata
set_vars<-.epiflows Access location metadata
vis_epiflows Visualise epidemic flows using visNetwork
YF_Brazil Yellow Fever Data from Brazil; 2016-12 to 2017-05
YF_coordinates Yellow Fever Data from Brazil; 2016-12 to 2017-05
YF_flows Yellow Fever Data from Brazil; 2016-12 to 2017-05
YF_locations Yellow Fever Data from Brazil; 2016-12 to 2017-05
[.epiflows Subset 'epiflows' objects