Identification of Somatic Mutation-Driven Immune Cells
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Documentation for package ‘SMDIC’ version 0.1.5
Help Pages
| SMDIC-package | Identification of somatic mutation-driven immune cells |
| cell24 | A data.frame of 24 immune cells name from Bindea et al |
| cell64 | A data.frame of 64 immune cells name from xCell method |
| cellmatrix | envData |
| envData | envData |
| exp.example | envData |
| exp2cell | exp2cell |
| gene2cellsummary | gene2cellsummary |
| GetExampleData | Get the example data |
| heatmapcell | heatmapcell |
| immunelist | A large list of 24 immune cells type-specific gene signatures from Bindea et al |
| maf2matrix | maf2matrix |
| mutcell | envData |
| mutcellsummary | mutcellsummary |
| mutcorcell | mutcorcell |
| mutmatrix | envData |
| plotCoocMutex | plotCoocMutex |
| plotwaterfall | plotwaterfall |
| survcell | survcell |
| xCell.data | xCell datasets |