Graph-Based Permutation Tests for Microbiome Data
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Documentation for package ‘phyloseqGraphTest’ version 0.1.1
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| phyloseqGraphTest-package | phyloseqGraphTest: Non-parametric graph-based testing for microbiome data. |
| graph_perm_test | Performs graph-based permutation tests |
| new_fortify.igraph | Fortify method for networks of class 'igraph' |
| plot_permutations | Plots the permutation distribution |
| plot_test_network | Plots the graph used for testing |
| print.psgraphtest | Print psgraphtest objects |
| scale_safely | Rescale x to (0, 1), except if x is constant |