Mean and Scale-Factor Modeling of Under- And Over-Dispersed Binary Data

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Documentation for package ‘BinaryEPPM’ version 3.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

BinaryEPPM-package	Mean and Scale-Factor Modeling of Under- And Over-Dispersed Binary Data
BBprob	Calculation of vector of probabilities for the beta binomial distribution.
Berkshires.litters	The data are of the number of male piglets born in litters of varying sizes for the Berkshire breed of pigs.
BinaryEPPM	Fitting of EPPM models to binary data.
CBprob	Calculation of vector of probabilities for the correlated binomial distribution.
coef.BinaryEPPM	Extraction of model coefficients for BinaryEPPM Objects
cooks.distance.BinaryEPPM	Cook's distance for BinaryEPPM Objects
doubexp	Double exponential Link Function
doubrecip	Double reciprocal Link Function
EPPMprob	Calculation of vector of probabilities for a extended Poisson process model (EPPM).
fitted.BinaryEPPM	Extraction of fitted values from BinaryEPPM Objects
GBprob	Calculation of vector of probabilities for the EPPM binomial distribution.
hatvalues.BinaryEPPM	Extraction of hat matrix values from BinaryEPPM Objects
KupperHaseman.case	Kupper and Haseman example data
LL.gradient	Function used to calculate the first derivatives of the log likelihood with respect to the model parameters.
LL.Regression.Binary	Function called by optim to calculate the log likelihood from the probabilities and hence perform the fitting of regression models to the binary data.
logLik.BinaryEPPM	Extract Log-Likelihood
loglog	Log-log Link Function
Model.BCBinProb	Probabilities for beta and correlated binomial distributions given p's and scale-factors.
Model.Binary	Function for obtaining output from distributional models.
Model.GB	Probabilities for binomial and EPPM extended binomial distributions given p's and b.
Model.JMVGB	Probabilities for EPPM extended binomial distributions given p's and scale-factors.
negcomplog	Negative complementary log-log Link Function
Parkes.litters	The data are of the number of male piglets born in litters of varying sizes for the Parkes breed of pigs.
plot.BinaryEPPM	Diagnostic Plots for BinaryEPPM Objects
powerlogit	Power Logit Link Function
predict.BinaryEPPM	Prediction Method for BinaryEPPM Objects
print.BinaryEPPM	Printing of BinaryEPPM Objects
print.summaryBinaryEPPM	Printing of summaryBinaryEPPM Objects
residuals.BinaryEPPM	Residuals for BinaryEPPM Objects
ropespores.case	Dilution series for the presence of rope spores.
ropespores.grouped	Dilution series for the presence of rope spores.
summary.BinaryEPPM	Summary of BinaryEPPM Objects
vcov.BinaryEPPM	Variance/Covariance Matrix for Coefficients
waldtest.BinaryEPPM	Wald Test of Nested Models for BinaryEPPM Objects
wordcount.case	Number of occurences of an article in five-word and ten-word samples from two authors.
wordcount.grouped	Number of occurences of an article in five-word and ten-word samples from two authors.
Yorkshires.litters	The data are of the number of male piglets born in litters of varying sizes for the Yorkshire breed of pigs.