hypervolume-package |
High Dimensional Geometry, Set Operations, Projection, and Inference Using Kernel Density Estimation, Support Vector Machines, and Convex Hulls |
acacia_pinus |
Data for Acacia and Pinus tree distributions |
circles |
Circles simulated dataset |
copy_param_hypervolume |
Generate hypervolumes using pre-existing parameters |
estimate_bandwidth |
Kernel bandwidth estimators for hypervolumes |
expectation_ball |
Hypersphere expectation |
expectation_box |
Hyperbox expectation |
expectation_convex |
Convex expectation |
expectation_maximal |
Maximal expectation |
find_optimal_occupancy_thin |
Find optimal parameters to calculate occupancy |
get_centroid |
Get centroid of hypervolume or hypervolume list |
get_centroid_weighted |
Get weighted centroid of hypervolume or hypervolume list |
get_occupancy_intersection_bootstrap |
Volume of the intersection of a bootstrapped occupancy object |
get_occupancy_stats |
Stats from occupancy objects |
get_occupancy_stats_bootstrap |
Stats from occupancy objects |
get_occupancy_unshared_bootstrap |
Volume of the unshared fraction of a bootstrapped occupancy object |
get_occupancy_volume_bootstrap |
Extract the volume from occupancy bootstrap objects |
get_relative_volume |
Extract the relative volume |
get_volume |
Extract volume |
get_volume-method |
Extract volume |
get_volume.Hypervolume |
Extract volume |
get_volume.HypervolumeList |
Extract volume |
hypervolume |
Hypervolume construction methods |
Hypervolume-class |
Class '"Hypervolume"' |
HypervolumeList-class |
Class '"HypervolumeList"' |
hypervolume_box |
Hypervolume construction via hyperbox kernel density estimation |
hypervolume_distance |
Distance between two hypervolumes |
hypervolume_estimate_probability |
Estimate probability a given location |
hypervolume_funnel |
Hypervolumes at different sample sizes |
hypervolume_gaussian |
Hypervolume construction via Gaussian kernel density estimation |
hypervolume_general_model |
Generates hypervolume by sampling from arbitrary model object. |
hypervolume_holes |
Hole detection |
hypervolume_inclusion_test |
Inclusion test |
hypervolume_join |
Concatenate hypervolumes |
hypervolume_n_occupancy |
Operations for groups of hypervolumes |
hypervolume_n_occupancy_bootstrap |
Operations for groups of hypervolumes |
hypervolume_n_occupancy_permute |
Hypervolumes through permuting labels of n pairwise groups of hypervolumes |
hypervolume_n_occupancy_test |
Significance of random points occupancy |
hypervolume_n_resample |
Bootstrap n hypervolumes |
hypervolume_overlap_confidence |
Confidence intervals for overlap statistics |
hypervolume_overlap_statistics |
Overlap statistics for set operations (Sorensen, Jaccard, etc.) |
hypervolume_overlap_test |
Null distribution for overlap statistics |
hypervolume_permute |
Hypervolumes through permuting data of two hypervolumes |
hypervolume_project |
Geographical projection of hypervolume for species distribution modeling, using the hypervolume as the environmental niche model. |
hypervolume_prune |
Removes small hypervolumes from a HypervolumeList |
hypervolume_redundancy |
Redundancy of a point in a hypervolume |
hypervolume_resample |
Hypervolume resampling methods |
hypervolume_save_animated_gif |
Saves animated GIF of three-dimensional hypervolume plot. |
hypervolume_segment |
Segments a hypervolume into multiple separate hypervolumes. |
hypervolume_set |
Set operations (intersection / union / unique components) |
hypervolume_set_n_intersection |
Multi-way set intersection |
hypervolume_svm |
Hypervolume construction via one-class support vector machine (SVM) learning model |
hypervolume_thin |
Reduces the number of random points in a hypervolume |
hypervolume_threshold |
Thresholds hypervolume and calculates volume quantile statistics (empirical cumulative distribution function) |
hypervolume_to_data_frame |
Convert hypervolumes to 'data.frame' |
hypervolume_variable_importance |
Hypervolume variable importance |
morphSnodgrassHeller |
Morphological data for Darwin's finches |
occupancy_bootstrap_gof |
Goodness of fit metrics for bootstrapped occupancy objects |
occupancy_filter |
Subset occupancy hypervolumes |
occupancy_to_intersection |
Get the intersection of an occupancy object |
occupancy_to_union |
Union of hypervolumes from an occupancy object |
occupancy_to_unshared |
Unshared fraction from an occupancy object |
padded_range |
Generates axis-wise range limits with padding |
plot.Hypervolume |
Plot a hypervolume or list of hypervolumes |
plot.HypervolumeList |
Plot a hypervolume or list of hypervolumes |
print.Hypervolume |
Print summary of hypervolume |
print.HypervolumeList |
Print summary of hypervolume |
quercus |
Data and demo for Quercus (oak) tree distributions |
show.Hypervolume |
Summary of hypervolume |
show.HypervolumeList |
Summary of hypervolume |
summary.Hypervolume |
Summary of hypervolume |
summary.HypervolumeList |
Summary of hypervolume |
to_hv_list |
Read hypervolumes from directory |
weight_data |
Abundance weighting and prior of data for hypervolume input |