%$% |
Exposition pipe |
%<>% |
Assignment pipe |
%>% |
Pipe |
chisq_pvalues |
Compute Chi-squared p-values |
chisq_pvalues_gdata |
Compute Chi-squared p-values on a Genotype data object |
diamond_annots |
Get diamond ggplot layer. |
gdata_add_gene_annots |
gdata_add_gene_annots |
gdata_add_gene_annots_aim_example |
gdata_add_gene_annots_aim_example |
gdata_add_gene_annots_hladr_example |
gdata_add_gene_annots_hladr_example |
gdata_scans_annots |
gdata_scan_annots |
gdata_snps_annots |
gdata_snp_annots |
get_biomart_metadb |
get_biomart_metadb |
ggplot_associations |
Ggplot associations |
ggplot_ld |
Ggplot linkage disequilibrium |
ggplot_snp_pos |
Ggplot SNPs position |
gtable_ld |
Gtable of linkage disequilibrium and chromosomic positions |
gtable_ld_associations |
Gtable of linkage disequilibrium and associations |
gtable_ld_associations_gdata |
Gtable of linkage disequilibrium and associations using a GenotypeData object |
gtable_ld_gdata |
Gtable of linkage disequilibrium and positions using a GenotypeData object |
load_gds_as_genotype_data |
Load GDS as Genotype Data |
parallel_apply |
Separate a matrix in a list of matrices of length the number of cores and apply a function on the columns in parallel |
print_qc_as_tex_table |
print_qc_as_tex_table |
save_hgdp_as_gds |
save_hgdp_as_gds |
select_region_idxs |
select_region_idxs |
snprelate_allele_frequencies |
Compute allele frequencie and snp missing rate |
snprelate_ld |
Wrapper for snpgdsLDMat to compute r2 |
snprelate_ld_select |
Wrapper for snpgdsLDpruning to select Tag SNPs |
snprelate_qc |
snprelate_qc |