spaa-package |
SPecies Association Analysis |
add.col |
Add one column from A to B, according to one column of common name. |
data2mat |
Convert species list data to species matrix |
datasample |
community matrix example |
deg2dec |
Degree to decimal |
dist2list |
Convert distance matrix to pairwised list |
freq.calc |
Species relative frequency |
geodist |
Hight precision Great circle distance between two places |
lab.mat |
Convert vector of XY labels to label matrix |
lgeodist |
Low precision Great circle distance between two places |
list2dist |
Convert pairwise list to distance matrix |
niche.overlap |
Niche overlap between each pair of species |
niche.overlap.boot |
Boostrap of niche overlap |
niche.overlap.boot.pair |
Niche overlap boostrap utility function |
niche.overlap.pair |
Niche overlap between one pair of species. |
niche.width |
Niche width |
plotlowertri |
Plotting lower semi matrix |
plotnetwork |
Correlation network plot |
sp.assoc |
Total species association |
sp.pair |
Species association between each pair of species |
spaa |
SPecies Association Analysis |
splist |
species list used in function add.col() |
sub.sp.matrix |
Subset species matrix according to relative frequency |
testdata |
Example Data |
turnover |
Calculating species turnover |
XYname |
Generating vector of XY labels |