| andes |
Divergence-time estimation data for cis-trans-Andean pairs |
| concatNexus |
concatNexus: Function for concatenation of nexus matrices both morphological and molecular |
| conflate |
conflate: Calculate the conflation of multiple distributions pdfs, plot = TRUE, from, to, n, add = FALSE |
| crossplot |
crossplot: Plot the median and HPD interval bars for pairs of distribution |
| c_truncauchy |
c_truncauchy: Estimate the c parameter for the truncated cauchy L distribution to be used in MCMCTree |
| density_fun |
density_fun: A way to represent distributions to be conflated |
| fasta2nexus |
fasta2nexus (deprecated): Function for converting molecular alignments from fasta to nexus format |
| findParams |
Function for estimation of probability density function parameters through quadratic optimization |
| laventa |
Geochronology samples from the Honda Group in Colombia |
| lognormalBeast |
Constructing a curve for the user-specified lognormal prior using Beast2 parameters |
| measureSimil |
Calculate the Intersection Between Two Densities |
| mswd.test |
Reduced chi-square test or mean square weighted deviation (mswd) test |
| stratCI |
stratCI: Estimate the confidence intervals of endpoints in stratigraphic intervals |
| summaryBrlen |
summaryBrlen: Summarise branch lengths on trees with identical topology |
| table2nexus |
table2nexus: Read a data matrix in delimited format and convert into a data matrix in nexus format |
| tnt2newick |
tnt2newick: Function for converting from TNT tree format to newick parenthetical format |
| topoFreq |
Frequency of topologies in a tree sample |
| xintercept |
xintercept: Estimate the x-intercept of an empirical cdf |
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