ALE |
Generic function for Accumulated Local Effect (ALE) |
ALE.gam |
Create Accumulated Local Effects (ALE) for GAMs |
bamV |
Fit a GAM model and get a gamViz object |
check.gamViz |
Some diagnostics for a fitted gam model |
check0D |
Checking GAM simulated residuals or responses |
check1D |
Checking GAM residuals or responses along one covariate |
check2D |
Checking GAM residuals along two covariates |
fix.family.cdf |
Getting the CDF of a gam family |
gamm4V |
Fit a GAMM or GAMM4 model and get a gamViz object |
gammV |
Fit a GAMM or GAMM4 model and get a gamViz object |
gamV |
Fit a GAM model and get a gamViz object |
getGam |
Convert gamViz object to gamObject |
getViz |
Converting gam objects to gamViz objects |
gridPrint |
Plotting plotSmooth objects on a grid |
listLayers |
Lists available layers for plotSmooth objects |
l_bound |
Add boundaries to smooth effect plot |
l_ciBar |
Adding confidence intervals to barplots |
l_ciLine |
Adding confidence intervals to effect plot |
l_ciPoly |
Adding confidence band to effect plots |
l_clusterLine |
Cluster and plot smooth effects |
l_coordContour |
Adding coordinate lines |
l_dens |
Adding density estimate heatmap |
l_dens1D |
Adding density estimate to a plot |
l_dens2D |
Adding density estimate heatmap |
l_densCheck |
Checking residuals conditional density |
l_fitBar |
Adding barplot to effect plots |
l_fitContour |
Adding fitted effect contour lines |
l_fitDens |
Adding density strip of fitted effect |
l_fitLine |
Add fitted smooth effect curve |
l_fitPoints |
Adding points representing the fitted effect |
l_fitRaster |
Adding raster representing the fitted effect |
l_glyphs2D |
Adding glyphs to 2D plots |
l_gridCheck1D |
Binning and checking GAM residuals |
l_gridCheck2D |
Binning and checking GAM residuals |
l_gridQCheck1D |
Checking sign of residuals along one covariate |
l_gridQCheck2D |
Binning and checking QGAM residuals |
l_hist |
Adding histogram to a plot |
l_points |
Add points to plot |
l_poly |
Add polygons to effect plots |
l_pvContour |
Adding contour of p-values |
l_pvRaster |
Adding raster or heat-map of p-values |
l_rug |
Adding rug to margins of a plot |
l_simLine |
Add simulated smooth effect curves |
l_vline |
Adding vertical line to a plot |
mqgamV |
Fit multiple QGAM models and get a mgamViz object |
plot.ALE1D |
Plot 1D Accumulated Local Effects (ALE) |
plot.fs.interaction.1D |
Plotting one dimensional smooth factor interactions |
plot.gamViz |
Basic GAM plotting |
plot.mgamViz |
Plotting multiple quantile GAMs |
plot.mgcv.smooth.1D |
Plotting one dimensional smooth effects |
plot.mgcv.smooth.2D |
Plotting two dimensional smooth effects |
plot.mgcv.smooth.MD |
Plotting slice of higher-dimensional smooth effects |
plot.mrf.smooth |
Plotting Markov random field smooths |
plot.multi.mgcv.smooth.1D |
Plotting one dimensional smooth effects |
plot.multi.mgcv.smooth.2D |
Plotting two dimensional smooth effects |
plot.multi.ptermFactor |
Plotting factor or logical parametric effects |
plot.multi.ptermInteraction |
Plotting parametric interactions |
plot.multi.ptermLogical |
Plotting factor or logical parametric effects |
plot.multi.ptermNumeric |
Plotting numeric parametric effects |
plot.multi.random.effect |
Plotting random effects |
plot.ptermFactor |
Plotting factor or logical parametric effects |
plot.ptermInteraction |
Plotting parametric interactions |
plot.ptermLogical |
Plotting factor or logical parametric effects |
plot.ptermMatrixNumeric |
Plotting numeric parametric effects |
plot.ptermNumeric |
Plotting numeric parametric effects |
plot.random.effect |
Plotting random effects |
plot.sos.smooth |
Plotting smooths on the sphere |
plotDiff |
Generic plotting of differences |
plotDiff.mgcv.smooth.1D |
Plotting differences between two 1D smooth effects |
plotDiff.mgcv.smooth.2D |
Plotting differences between two 2D smooth effects |
plotDiff.sos.smooth |
Plotting differences between two smooths on the sphere |
plotRGL |
Generic RGL plotting function |
plotRGL.mgcv.smooth.2D |
Visualizing 2D smooth effects in 3D |
plotRGL.mgcv.smooth.MD |
Visualizing a 2D slice of a smooth effects in 3D |
plotSlice |
Plotting sequence of slices of 2D smooth effect |
postSim |
Posterior simulation from a GAM object |
print.checkGam |
Printing the output of check.gamViz |
print.plotGam |
Printing the output of plot.gamViz |
print.plotSmooth |
Printing plots of smooth effects |
print.qqGam |
Printing the output of qq.gamViz |
pterm |
Extracting parametric effects from a GAM model |
qgamV |
Fit a QGAM model and get a gamViz object |
qq |
Generic QQ plots |
qq.gamViz |
QQ plots for gam model residuals |
qqline |
Quantile-Quantile Plots |
qqnorm |
Quantile-Quantile Plots |
qqplot |
Quantile-Quantile Plots |
qqplots |
Quantile-Quantile Plots |
residuals.gamViz |
Generalized Additive Model residuals |
shine |
Generic shine function |
shine.qqGam |
Shiny QQ-plots for GAMs |
simulate.gam |
Simulating responses from a GAM object |
sm |
Extracting a smooth effect from a GAM model |
zoom |
Generic zooming function |
zoom.qqGam |
Efficiently zooming on GAM QQ-plots |
zto1 |
Constructing a decreasing function from (0,1) to (0,1) |