Bayesian Cost Effectiveness Analysis


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Documentation for package ‘BCEA’ version 2.4.1

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B C D E F G I K L M N O P Q S T V

BCEA-package BCEA: A package for Bayesian Cost-Effectiveness Analysis

-- B --

BCEA BCEA: A package for Bayesian Cost-Effectiveness Analysis
bcea Create Bayesian Cost-Effectiveness Analysis Object
bcea.bugs Create Bayesian Cost-Effectiveness Analysis Object
bcea.default Create Bayesian Cost-Effectiveness Analysis Object
bcea.rjags Create Bayesian Cost-Effectiveness Analysis Object
bcea.rstan Create Bayesian Cost-Effectiveness Analysis Object
best_interv_given_k Optimal intervention

-- C --

c Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
c.pts Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
ceac.plot Cost-Effectiveness Acceptability Curve (CEAC) Plot
ceac.plot.bcea Cost-Effectiveness Acceptability Curve (CEAC) Plot
ceac_ggplot Cost-Effectiveness Acceptability Curve (CEAC) Plot By Graph Device
ceac_matplot CEAC Matrix Plot
ceac_plot_base Cost-Effectiveness Acceptability Curve (CEAC) Plot By Graph Device
ceac_plot_base.bcea Cost-Effectiveness Acceptability Curve (CEAC) Plot By Graph Device
ceac_plot_base.pairwise Cost-Effectiveness Acceptability Curve (CEAC) Plot By Graph Device
ceac_plot_ggplot Cost-Effectiveness Acceptability Curve (CEAC) Plot By Graph Device
ceac_plot_ggplot.bcea Cost-Effectiveness Acceptability Curve (CEAC) Plot By Graph Device
ceac_plot_ggplot.pairwise Cost-Effectiveness Acceptability Curve (CEAC) Plot By Graph Device
ceac_plot_graph Cost-Effectiveness Acceptability Curve (CEAC) Plot By Graph Device
ceac_plot_plotly Cost-Effectiveness Acceptability Curve (CEAC) Plot By Graph Device
ceaf.plot Cost-Effectiveness Acceptability Frontier (CEAF) plot
ceaf.plot.pairwise Cost-Effectiveness Acceptability Frontier (CEAF) plot
ceef.plot Cost-Effectiveness Efficiency Frontier (CEAF) Plot
ceef.plot.bcea Cost-Effectiveness Efficiency Frontier (CEAF) Plot
ceef.summary Summary table for CEEF
ceef_plot_base Cost-effectiveness Efficiency Frontier Plot By Graph Device
ceef_plot_ggplot Cost-effectiveness Efficiency Frontier Plot By Graph Device
ceef_plot_graph Cost-effectiveness Efficiency Frontier Plot By Graph Device
ceplane.plot Cost-effectiveness Plane Plot
ceplane.plot.bcea Cost-effectiveness Plane Plot
ceplane_geom_params Extract Separate Parameter Sets
ceplane_ggplot_params CE-plane ggplot Parameters
ceplane_plot_base Cost-Effectiveness Plane Plot By Graph Device
ceplane_plot_base.bcea Cost-Effectiveness Plane Plot By Graph Device
ceplane_plot_ggplot Cost-Effectiveness Plane Plot By Graph Device
ceplane_plot_ggplot.bcea Cost-Effectiveness Plane Plot By Graph Device
ceplane_plot_graph Cost-Effectiveness Plane Plot By Graph Device
ceplane_plot_plotly Cost-Effectiveness Plane Plot By Graph Device
ceplane_plot_plotly.bcea Cost-Effectiveness Plane Plot By Graph Device
CEriskav Cost-effectiveness Analysis Including a Parameter of Risk Aversion
CEriskav.default Cost-effectiveness Analysis Including a Parameter of Risk Aversion
CEriskav<- Cost-effectiveness Analysis Including a Parameter of Risk Aversion
CEriskav<-.bcea Cost-effectiveness Analysis Including a Parameter of Risk Aversion
CEriskav<-.default Cost-effectiveness Analysis Including a Parameter of Risk Aversion
CEriskav_assign Cost-effectiveness Analysis Including a Parameter of Risk Aversion
CEriskav_plot_base Cost-effectiveness Plot Including a Parameter of Risk Aversion Choice of base R, ggplot2.
CEriskav_plot_ggplot Cost-effectiveness Plot Including a Parameter of Risk Aversion Choice of base R, ggplot2.
CEriskav_plot_graph Cost-effectiveness Plot Including a Parameter of Risk Aversion Choice of base R, ggplot2.
compute.evppi Compute EVPPI
compute_CEAC Compute Cost-Effectiveness Acceptability Curve
compute_ceaf Compute Cost-Effectiveness Acceptability Frontier
compute_EIB Compute Expected Incremental Benefit
compute_eib_cri Calculate Credible Intervals
compute_EVI Compute Expected Value of Information
compute_IB Compute Incremental Benefit
compute_ICER Compute Incremental Cost-Effectiveness Ratio
compute_kstar Compute k^*
compute_ol Compute Opportunity Loss
compute_p_best_interv Compute Probability Best Intervention
compute_U Compute U Statistic
compute_Ubar Compute NB for mixture of interventions
compute_Ustar Compute Ustar Statistic
compute_vi Compute Value of Information
comp_names_from_ Comparison Names From
contour Contour Plots for the Cost-Effectiveness Plane
contour.bcea Contour Plots for the Cost-Effectiveness Plane
contour2 Specialised CE-plane Contour Plot
contour2.bcea Specialised CE-plane Contour Plot
contour_base Contour Cost-Effectiveness Plane
contour_ggplot Contour Cost-Effectiveness Plane
contour_graph Contour Cost-Effectiveness Plane
convert_pts_to_mm Use from Base R to ggplot
cost.GP Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
cost.hosp Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
cost.otc Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
cost.time.off Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
cost.time.vac Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
cost.travel Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
cost.trt1 Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
cost.trt2 Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
cost.vac Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
createInputs Create Inputs for EVPI Calculation
createInputs.bugs Create Inputs for EVPI Calculation
createInputs.data.frame Create Inputs for EVPI Calculation
createInputs.default Create Inputs for EVPI Calculation
createInputs.numeric Create Inputs for EVPI Calculation
createInputs.rjags Create Inputs for EVPI Calculation
createInputs.stanfit Create Inputs for EVPI Calculation

-- D --

data Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
diag.evppi Diagnostic Plots For The Results Of The EVPPI

-- E --

e Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
e.pts Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
eib.plot Expected Incremental Benefit (EIB) Plot
eib.plot.bcea Expected Incremental Benefit (EIB) Plot
eib_params_base EIB parameters specific to base R plot
eib_plot_base Expected Incremental Benefit Plot By Graph Device
eib_plot_ggplot Expected Incremental Benefit Plot By Graph Device
eib_plot_graph Expected Incremental Benefit Plot By Graph Device
eib_plot_plotly Expected Incremental Benefit Plot By Graph Device
estimate.hyperparams Estimate hyperparameters
evi.plot Expected Value of Information (EVI) Plot
evi.plot.bcea Expected Value of Information (EVI) Plot
evi.plot.mixedAn EVI Plot of the Health Economic Analysis For Mixed Analysis
evi_plot_base Expected Value of Information Plot By Graph Device
evi_plot_ggplot Expected Value of Information Plot By Graph Device
evi_plot_graph Expected Value of Information Plot By Graph Device
evi_plot_plotly Expected Value of Information Plot By Graph Device
evppi Expected Value of Perfect Partial Information (EVPPI) for Selected Parameters
evppi.bcea Expected Value of Perfect Partial Information (EVPPI) for Selected Parameters
evppi.default Expected Value of Perfect Partial Information (EVPPI) for Selected Parameters
evppi_plot_base Plot Expected Value of Partial Information With Respect to a Set of Parameters
evppi_plot_ggplot Plot Expected Value of Partial Information With Respect to a Set of Parameters
evppi_plot_graph Plot Expected Value of Partial Information With Respect to a Set of Parameters

-- F --

fit.gam Gaussian Additive Model Fitting
fit.gp Fit Gaussian Process
fit.inla Fit INLA

-- G --

geom_cri Credible interval ggplot geom

-- I --

ib.plot Incremental Benefit (IB) Distribution Plot
ib.plot.bcea Incremental Benefit (IB) Distribution Plot
ib_plot_base IB plot base R version
ib_plot_ggplot IB plot base R version
ib_plot_graph IB plot base R version
info.rank Information-Rank Plot for bcea Class
info.rank.bcea Information-Rank Plot for bcea Class
inforank_params Prepare Info Rank plot parameters
info_rank_base Info Rank Plot By Graph Device
info_rank_ggplot Info Rank Plot By Graph Device
info_rank_graph Info Rank Plot By Graph Device
info_rank_plotly Info Rank Plot By Graph Device
is.bcea Check bcea Class

-- K --

kstar_vlines Prepare K-star vertical lines

-- L --

life.years Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
line_labels Create Labels for Plot
line_labels.default Create Labels for Plot
line_labels.pairwise Create Labels for Plot
loo_rank Leave-one-out ranking

-- M --

make.mesh Make Mesh
make.proj INLA Fitting
make.report Make Report
make_legend_plotly Legend Positioning
mixedAn Cost-Effectiveness Analysis When Multiple (Possibly Non-Cost-Effective) Interventions are Present on the Market
mixedAn.default Cost-Effectiveness Analysis When Multiple (Possibly Non-Cost-Effective) Interventions are Present on the Market
mixedAn<- Cost-Effectiveness Analysis When Multiple (Possibly Non-Cost-Effective) Interventions are Present on the Market
multi.ce Cost-effectiveness Analysis With Multiple Comparison
multi.ce.bcea Cost-effectiveness Analysis With Multiple Comparison
multiplot Plot Multiple bcea Graphs

-- N --

N Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
N.outcomes Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
N.resources Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
new_bcea Constructor for bcea
num_lines Get number of lines
num_lines.bcea Get number of lines
num_lines.default Get number of lines
num_lines.evppi Get number of lines
num_lines.pairwise Get number of lines

-- O --

openPDF Automatically open pdf output using default pdf viewer

-- P --

pi Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
plot.bcea Summary Plot of the Health Economic Analysis
plot.CEriskav Plots EIB and EVPI for the Risk Aversion Case
plot.evppi Plot Expected Value of Partial Information With Respect to a Set of Parameters
plot.mesh Mesh Plot
plot_eib_cri Plot Credible Intervals
post.density Gaussian Process Fitting
prep.x Prepare Delta arrays
prepare.output Prepare output
prep_ceplane_params Prepare CE-plane Parameters
prep_eib_params Prepare EIB plot parameters
prep_frontier_data Prepare frontier data
print.bcea bcea Print Method

-- Q --

QALYs.adv Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
QALYs.death Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
QALYs.hosp Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
QALYs.inf Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
QALYs.pne Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
quiet Allow disabling of the cat messages

-- S --

select_plot_type Choose Graphical Engine
setComparisons Set Comparisons Group
setComparisons<- Set Comparison Group
setComparisons<-.bcea Set Comparison Group
setComparisons<-.default Set Comparison Group
setComparisons_assign Set Comparison Group
setKmax<- Set Maximum Willingness to Pay
setKmax<-.bcea Set Maximum Willingness to Pay
setKmax<-.default Set Maximum Willingness to Pay
setKmax_assign Set Maximum Willingness to Pay
setReferenceGroup<- Set Reference Group
setReferenceGroup<-.bcea Set Reference Group
setReferenceGroup<-.default Set Reference Group
setReferenceGroup_assign Set Reference Group
sim_table Table of Simulation Statistics for the Health Economic Model
sim_table.bcea Table of Simulation Statistics for the Health Economic Model
Smoking Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
smoking Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
smoking_output Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions
struct.psa Structural Probability Sensitivity Analysis
summary.bcea Summary Method for Objects of Class 'bcea'
summary.mixedAn Summary Methods For Objects in the Class 'mixedAn' (Mixed Analysis)

-- T --

tabulate_means Calculate Dataset For ICERs From bcea Object
treats Data set for the Bayesian model for the cost-effectiveness of smoking cessation interventions

-- V --

Vaccine Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
vaccine Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
vaccine_mat Data set for the Bayesian model for the cost-effectiveness of influenza vaccination
validate_bcea Validate bcea
validate_eib_params Validate EIB parameters