BuildNetwork |
Display cell-type to cell-type interactive networks |
BuildNetwork-method |
Display cell-type to cell-type interactive networks |
BuildShiny |
A shiny app to display scDiffCom results |
BuildShiny-method |
A shiny app to display scDiffCom results |
EraseRawCCI |
Create a copy of a scDiffCom object without 'cci_table_raw' |
EraseRawCCI-method |
Create a copy of a scDiffCom object without 'cci_table_raw' |
FilterCCI |
Filter a scDiffCom object with new filtering parameters |
FilterCCI-method |
Filter a scDiffCom object with new filtering parameters |
gene_ontology_level |
All gene ontology terms annotated with their levels |
GetDistributions |
Return the slot 'distributions' from a scDiffCom object |
GetDistributions-method |
Return the slot 'distributions' from a scDiffCom object |
GetParameters |
Return the slot 'parameters' from a scDiffCom object |
GetParameters-method |
Return the slot 'parameters' from a scDiffCom object |
GetTableCCI |
Return (a subset) of the slot 'cci_table_raw' or 'cci_table_detected' from a scDiffCom object |
GetTableCCI-method |
Return (a subset) of the slot 'cci_table_raw' or 'cci_table_detected' from a scDiffCom object |
GetTableORA |
Return some or all ORA tables from the slot 'ora_table' from a scDiffCom object |
GetTableORA-method |
Return some or all ORA tables from the slot 'ora_table' from a scDiffCom object |
LRI_human |
A collection of human ligand-receptor interactions. |
LRI_mouse |
A collection of mouse ligand-receptor interactions. |
LRI_rat |
A collection of rat ligand-receptor interactions. |
PlotORA |
Display top over-represented keywords from a category of interest |
PlotORA-method |
Display top over-represented keywords from a category of interest |
ReduceGO |
Reduce scDiffCom GO Terms |
ReduceGO-method |
Reduce scDiffCom GO Terms |
RunORA |
Run over-representation analysis |
RunORA-method |
Run over-representation analysis |
run_interaction_analysis |
Run (differential) intercellular communication analysis |
scDiffCom-class |
The scDiffCom Class |
seurat_sample_tms_liver |
A down-sampled Seurat object to use for testing and benchmarking |
show-method |
Display a scDiffCom object |