Cell Type Deconvolution from Gene Expressions

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Documentation for package ‘dtangle’ version 2.0.9

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

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baseline_exprs	Estimate the offset terms.
combine_Y_refs	Row-binds 'Y' with 'references' and generates 'pure_samples'.
dtangle	Deconvolve cell type mixing proportions from gene expression data.
dtangle2	Deconvolve cell type mixing proportions from gene expression data.
est_phats	Estimate the gene type proportions.
find_markers	Find marker genes for each cell type.
get_gamma	Determine gamma value by data type.
process_markers	Determines number of markers 'n_markers', marker list 'mrkrs', and 'gamma'.
shen_orr_ex	Example Subset of Shen-Orr deconvolution data set.