A Modular Platform for Reproducible Modeling of Species Niches and Distributions

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Documentation for package ‘wallace’ version 2.1.2

• DESCRIPTION file.
• Package NEWS.

Help Pages

wallace-package	_Wallace_: A modular platform for reproducible ecological modeling
create_module	Create a Wallace module
ecoClimate_getdata	ecoClimate_getdata
ecoClimate_select	ecoClimate_select
envs_ecoClimate	envs_ecoClimate Obtain ecoClimate variables
envs_userEnvs	envs_userEnvs
envs_worldclim	envs_worldclim Obtain WorldClim variables
espace_nicheOv	espace_nicheOv Niche Overlap
espace_occDens	Occurrence density grid
espace_pca	espace_pca Principal component analysis
model_bioclim	model_bioclim Generate Bioclim model
model_maxent	model_maxent Generate maxent.jar or maxnet model
occs_queryDb	occs_queryDb Query online database for species occurrence records.
occs_userOccs	occs_userOccs Loads user provided occurrence records
part_partitionOccs	part_partitionOccs Partition occurrence data
penvs_bgExtent	penvs_bgExtent Generate background extent
penvs_bgMask	penvs_bgMask Mask environmental data
penvs_bgSample	penvs_bgSample Sample background points
penvs_drawBgExtent	penvs_drawBgExtent: Draw background extent
penvs_userBgExtent	penvs_userBgExtent: user provided background extent
poccs_removeByID	poccs_removeByID Remove occurrence by ID
poccs_selectOccs	poccs_selectOccs Remove occurrences outside of polygon
poccs_thinOccs	poocs_thinOccs Thin occurrences
register_module	Register a Wallace module
run_wallace	Run _Wallace_ Application
vis_bioclimPlot	vis_bioclimPlot Visualize bivariate plot of BIOCLIM model
wallace	_Wallace_: A modular platform for reproducible ecological modeling
xfer_area	xfer_area Transfer model to a new area
xfer_draw	xfer_draw Draw extent of transfer
xfer_mess	xfer_mess generate MESS map for transferred raster
xfer_time	xfer_time Transfer model to a new time
xfer_userEnvs	xfer_userEnvs Transfer model to user specified area and time
xfer_userExtent	xfer_userExtent: user provided extent of transfer