A General Framework for Flexible Multi-State Survival Modelling

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Documentation for package ‘flexmsm’ version 0.1.2

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flexmsm-package flexmsm: Flexible Multi-State Modelling
conv.check Convergence diagnostics on fitted model output.
flexmsm flexmsm: Flexible Multi-State Modelling
fMmsm Flexible transition intensity based models for two dependant multistate processes
fmsm Flexible transition intensity based models for univariate multistate processes
fmsmObject Fitted fmsmObject object
IDM_cav Cardiac allograft vasculopathy (CAV) data
LikGradapproxHess.general Likelihood, gradient and Hessian for univariate transition intensity based models
LikGradHess.CM Likelihood, gradient and Hessian for univariate transition intensity based models for the base dependence model.
LikGradHess.general Likelihood, gradient and Hessian for univariate transition intensity based models
logLik.fmsm Extract the log likelihood for the fitted multistate model
P.pred Predict and plot the transition probabilities
plot.fmsm Function to plot the smooths included in the model specifications.
print.fmsm Print a fmsm object
print.summary.fMmsm Flexible transition intensity based models for univariate multistate processes
print.summary.fmsm Flexible transition intensity based models for two dependant multistate processes
Q.matr.setup.general Internal function
Q.pred Predict and plot the transition intensities
simulateIDM Function to predict and plot the estimated transition intensities (and confidence intervals).
state.pairs.CT Function to extract state pair counts and observed (right) times.
summary.fMmsm Summary for fitted model ouput.
summary.fmsm Summary for fitted model ouput.