alpha.calc |
Genetic variance effects |
alpha.cond |
Conditional analysis for genetic variance effects |
alpha.continuous.cond |
variance effect conditioned on continuous variables |
alpha.multi.est |
Variance parameters |
corr.calibration |
Calibration for the correlation test |
dominance.calc |
Genetic dominance effects |
dominance_CC.calc |
Genetic dominance effects on a case control variable |
ellipse.by.gen |
Ellipse best fit plot |
env_interaction.calc |
Variant-Environmental interaction effects |
env_interaction_CC.calc |
Variant-Environmental interaction effects on a case control variable |
expected.variance.effect |
Expected variance effect from additive effect |
hist_by_gen |
Histogram by genotype |
interaction.calc |
Variant-Variant interaction effects |
interaction_CC.calc |
Variant-Variant interaction effects on a case control variable |
kappa_calc |
Genetic correlation effects |
pairwise_env_int.calc |
Pairwise environmental interaction effects |
pairwise_env_int_CC.calc |
Pairwise environmental interaction effects for a case control variable |
pairwise_int.calc |
Pairwise interaction effects |
pairwise_int_CC.calc |
Pairwise interaction effects for a case control variable |
PRS_creator |
Creates poligenic risk scores |
train_and_impute_PRS |
Trains and imputes a poligenic risk score (PRS) |
var.adj |
Mean and variance effect adjustments. |
Var.assoc |
Uncertanty association |
var.summary |
Variance summary statistics |
VarGS.plot |
Actual variance vs predicted variance plot |
Viol.by.gen |
Violin plot by genotype |