Risk Prediction on Trees

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Documentation for package ‘Mangrove’ version 1.21

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

Mangrove-package	Mangrove: Risk prediction on trees
addPed	The MangroveTree class
applyBetas	The MangroveContPreds class
applyORs	The MangroveRiskPreds class
calcBetas	The MangroveContPreds class
calcORs	The MangroveRiskPreds class
ccped	Example data for the Mangrove vignette
contped	Example data for the Mangrove vignette
exampleBetas	Example data for the Mangrove vignette
exampleORs	Example data for the Mangrove vignette
famped	Example data for the Mangrove vignette
getPrevs	The MangroveTree class
getVarExp	Calculating liability-scale variance explained by genetic risk variants
getVarExpSim	Calculating liability-scale variance explained by genetic risk variants
initialiseTree	The MangroveTree class
Mangrove	Mangrove: Risk prediction on trees
MangroveBetas	The MangroveBetas class
MangroveContPreds	The MangroveContPreds class
MangroveExamples	Example data for the Mangrove vignette
MangroveORs	The MangroveORs class
MangrovePed	The MangrovePed class
MangroveRiskPreds	The MangroveRiskPreds class
MangroveSample	The MangroveSample class
MangroveTree	The MangroveTree class
plot.MangroveBetas	The MangroveBetas class
plot.MangroveContPreds	The MangroveContPreds class
plot.MangroveORs	The MangroveORs class
plot.MangrovePed	The MangrovePed class
plot.MangroveRiskPreds	The MangroveRiskPreds class
plot.MangroveSample	The MangroveSample class
plot.MangroveTree	The MangroveTree class
plotNaivePrev	Plotting expected
plotSampledPrev	Plotting expected
print.MangroveBetas	The MangroveBetas class
print.MangroveContPreds	The MangroveContPreds class
print.MangroveORs	The MangroveORs class
print.MangrovePed	The MangrovePed class
print.MangroveRiskPreds	The MangroveRiskPreds class
print.MangroveSample	The MangroveSample class
print.MangroveTree	The MangroveTree class
readBetas	The MangroveBetas class
readORs	The MangroveORs class
readPed	The MangrovePed class
summary.MangroveBetas	The MangroveBetas class
summary.MangroveContPreds	The MangroveContPreds class
summary.MangroveORs	The MangroveORs class
summary.MangrovePed	The MangrovePed class
summary.MangroveRiskPreds	The MangroveRiskPreds class
summary.MangroveSample	The MangroveSample class
summary.MangroveTree	The MangroveTree class