.Coda.Options |
Options settings for the codamenu driver |
.Coda.Options.Default |
Options settings for the codamenu driver |
acfplot |
Trellis plots for mcmc objects |
acfplot.mcmc |
Trellis plots for mcmc objects |
acfplot.mcmc.list |
Trellis plots for mcmc objects |
as.array.mcmc.list |
Conversions of MCMC objects |
as.matrix.mcmc |
Conversions of MCMC objects |
as.matrix.mcmc.list |
Conversions of MCMC objects |
as.mcmc |
Markov Chain Monte Carlo Objects |
as.mcmc.default |
Markov Chain Monte Carlo Objects |
as.mcmc.list |
Replicated Markov Chain Monte Carlo Objects |
as.mcmc.list.default |
Replicated Markov Chain Monte Carlo Objects |
as.mcmc.mcmc.list |
Conversions of MCMC objects |
as.ts.mcmc |
Coerce mcmc object to time series |
autocorr |
Autocorrelation function for Markov chains |
autocorr.diag |
Autocorrelation function for Markov chains |
autocorr.diag.mcmc |
Autocorrelation function for Markov chains |
autocorr.diag.mcmc.list |
Autocorrelation function for Markov chains |
autocorr.plot |
Plot autocorrelations for Markov Chains |
batchSE |
Batch Standard Error |
bugs2jags |
Convert WinBUGS data file to JAGS data file |
chanames |
Named dimensions of MCMC objects |
chanames<- |
Named dimensions of MCMC objects |
coda.options |
Options settings for the codamenu driver |
codamenu |
Main menu driver for the coda package |
crosscorr |
Cross correlations for MCMC output |
crosscorr.plot |
Plot image of correlation matrix |
cumuplot |
Cumulative quantile plot |
densityplot.mcmc |
Trellis plots for mcmc objects |
densityplot.mcmc.list |
Trellis plots for mcmc objects |
densplot |
Probability density function estimate from MCMC output |
display.coda.options |
Options settings for the codamenu driver |
effectiveSize |
Effective sample size for estimating the mean |
end.mcmc |
Time attributes for mcmc objects |
end.mcmc.list |
Time attributes for mcmc objects |
frequency.mcmc |
Time attributes for mcmc objects |
gelman.diag |
Gelman and Rubin's convergence diagnostic |
gelman.plot |
Gelman-Rubin-Brooks plot |
geweke.diag |
Geweke's convergence diagnostic |
geweke.plot |
Geweke-Brooks plot |
heidel.diag |
Heidelberger and Welch's convergence diagnostic |
HPDinterval |
Highest Posterior Density intervals |
HPDinterval.mcmc |
Highest Posterior Density intervals |
HPDinterval.mcmc.list |
Highest Posterior Density intervals |
is.mcmc |
Markov Chain Monte Carlo Objects |
is.mcmc.list |
Replicated Markov Chain Monte Carlo Objects |
levelplot.mcmc |
Trellis plots for mcmc objects |
levelplot.mcmc.list |
Trellis plots for mcmc objects |
line |
Simple linear regression example |
mcmc |
Markov Chain Monte Carlo Objects |
mcmc.list |
Replicated Markov Chain Monte Carlo Objects |
mcmcUpgrade |
Upgrade mcmc objects in obsolete format |
mcpar |
Mcpar attribute of MCMC objects |
multi.menu |
Choose multiple options from a menu |
nchain |
Dimensions of MCMC objects |
niter |
Dimensions of MCMC objects |
nvar |
Dimensions of MCMC objects |
pcramer |
The Cramer-von Mises Distribution |
plot.mcmc |
Summary plots of mcmc objects |
plot.mcmc.list |
Replicated Markov Chain Monte Carlo Objects |
print.mcmc |
Markov Chain Monte Carlo Objects |
qqmath.mcmc |
Trellis plots for mcmc objects |
qqmath.mcmc.list |
Trellis plots for mcmc objects |
raftery.diag |
Raftery and Lewis's diagnostic |
read.and.check |
Read data interactively and check that it satisfies conditions |
read.coda |
Read output files in CODA format |
read.coda.interactive |
Read CODA output files interactively |
read.jags |
Read output files in CODA format |
read.openbugs |
Read CODA output files produced by OpenBUGS |
rejectionRate |
Rejection Rate for Metropolis-Hastings chains |
rejectionRate.mcmc |
Rejection Rate for Metropolis-Hastings chains |
rejectionRate.mcmc.list |
Rejection Rate for Metropolis-Hastings chains |
spectrum0 |
Estimate spectral density at zero |
spectrum0.ar |
Estimate spectral density at zero |
start.mcmc |
Time attributes for mcmc objects |
start.mcmc.list |
Time attributes for mcmc objects |
summary.mcmc |
Summary statistics for Markov Chain Monte Carlo chains |
summary.mcmc.list |
Summary statistics for Markov Chain Monte Carlo chains |
thin |
Thinning interval |
thin.mcmc |
Time attributes for mcmc objects |
thin.mcmc.list |
Time attributes for mcmc objects |
time.mcmc |
Time attributes for mcmc objects |
time.mcmc.list |
Time attributes for mcmc objects |
traceplot |
Trace plot of MCMC output |
varnames |
Named dimensions of MCMC objects |
varnames<- |
Named dimensions of MCMC objects |
window.mcmc |
Time windows for mcmc objects |
window.mcmc.list |
Time windows for mcmc objects |
xyplot.mcmc |
Trellis plots for mcmc objects |
xyplot.mcmc.list |
Trellis plots for mcmc objects |
[.mcmc |
Extract or replace parts of MCMC objects |
[.mcmc.list |
Extract or replace parts of MCMC objects |