An Interface Between the 'FSKX' Standard and 'R'
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Documentation for package ‘FSK2R’ version 0.1.3
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| check_manifest_files | Checks that the files defined in the manifest exist |
| convert_metadata_to_lists | Fix the metadat so that it is lists |
| create_fsk | Creates an FSK model from an existing R script |
| dataframe_to_list | Converts a dataframe to a list |
| export_fsk | Exports an object of FSK class as an .fskx file |
| export_manifest | Functions for exporting the manifest of an FSK2R object |
| export_metadata | Function for exporting the metadata of an FSK2R object |
| export_modelmetadata | Functions for exporting the model metadata of an FSK2R object |
| export_otherfiles | Export other files |
| export_packages | Functions for exporting the packages of an FSK2R object |
| export_readme | Functions for exporting the README of an FSK2R object |
| export_R_model | Functions for exporting the R model of an FSK2R object |
| export_sbmlModel | Export the model.sbml |
| export_simulation | Export the sim.sedml |
| export_visualization | Functions for exporting the visualization script of an FSK2R object |
| find_packages | Finds where packages are stored |
| FSK_runner | Startup FSK runner |
| get_background | Returns the background of an FSK object |
| get_general_info | Returns the general info of an FSK object |
| get_modelmath | Returns the model math of an FSK object |
| get_readme | Readme of an FSK object |
| get_scope | Returns the scope of an FSK object |
| get_session_info | Extract session information |
| get_simulations | Returns a summary of the simulations of an FSK object (NULL) |
| import_fsk | Import an FSK model into R |
| import_fsk_join | Import of FSK with join node |
| is.FSK2R | Is it an instance of FSK2R? |
| is_fsk_with_r | Does the object have an R model? |
| map_FSK_metadata | Map for the contents of the metadata |
| map_metadata_xml_template | Map between the names used in the template and the xml |
| metadata_list_to_fsk | From read_fsk_metadata_XX to FSK2R format |
| n_simuls_fsk | Number of simulations in the FSK2R object |
| read_fsk_json_metadata | Read the metadata.json file |
| read_fsk_manifest | Read the manifest of an FSK file and convert it to a data.frame |
| read_fsk_metadata_excel | FSK metadata from local Excel file |
| read_fsk_model | Read the model.sbml |
| read_fsk_packages | Read the packages.json |
| read_fsk_rdf_metadata | Read the metadata.rdf |
| read_fsk_readme | Read the README file |
| read_fsk_sim | Read the sim.sedml file |
| read_other_files | Read "other files" |
| read_R_model | Reads the R model in an FSK model |
| read_visualization | Reads the visualization script in an FSK model |
| run_all_simulations | Run every simulation in an FSK object |
| run_simulation | Run one simulation in an FSK object |
| set_new_simulation | Define a new simulation in an FSK2R object |
| set_readme | Readme of an FSK object |
| update_manifest | Updates the manifest file |