check_manifest_files |
Checks that the files defined in the manifest exist |
convert_metadata_to_lists |
Fix the metadat so that it is lists |
create_fsk |
Creates an FSK model from an existing R script |
dataframe_to_list |
Converts a dataframe to a list |
export_fsk |
Exports an object of FSK class as an .fskx file |
export_manifest |
Functions for exporting the manifest of an FSK2R object |
export_metadata |
Function for exporting the metadata of an FSK2R object |
export_modelmetadata |
Functions for exporting the model metadata of an FSK2R object |
export_otherfiles |
Export other files |
export_packages |
Functions for exporting the packages of an FSK2R object |
export_readme |
Functions for exporting the README of an FSK2R object |
export_R_model |
Functions for exporting the R model of an FSK2R object |
export_sbmlModel |
Export the model.sbml |
export_simulation |
Export the sim.sedml |
export_visualization |
Functions for exporting the visualization script of an FSK2R object |
find_packages |
Finds where packages are stored |
FSK_runner |
Startup FSK runner |
get_background |
Returns the background of an FSK object |
get_general_info |
Returns the general info of an FSK object |
get_modelmath |
Returns the model math of an FSK object |
get_readme |
Readme of an FSK object |
get_scope |
Returns the scope of an FSK object |
get_session_info |
Extract session information |
get_simulations |
Returns a summary of the simulations of an FSK object (NULL) |
import_fsk |
Import an FSK model into R |
import_fsk_join |
Import of FSK with join node |
is.FSK2R |
Is it an instance of FSK2R? |
is_fsk_with_r |
Does the object have an R model? |
map_FSK_metadata |
Map for the contents of the metadata |
map_metadata_xml_template |
Map between the names used in the template and the xml |
metadata_list_to_fsk |
From read_fsk_metadata_XX to FSK2R format |
n_simuls_fsk |
Number of simulations in the FSK2R object |
read_fsk_json_metadata |
Read the metadata.json file |
read_fsk_manifest |
Read the manifest of an FSK file and convert it to a data.frame |
read_fsk_metadata_excel |
FSK metadata from local Excel file |
read_fsk_model |
Read the model.sbml |
read_fsk_packages |
Read the packages.json |
read_fsk_rdf_metadata |
Read the metadata.rdf |
read_fsk_readme |
Read the README file |
read_fsk_sim |
Read the sim.sedml file |
read_other_files |
Read "other files" |
read_R_model |
Reads the R model in an FSK model |
read_visualization |
Reads the visualization script in an FSK model |
run_all_simulations |
Run every simulation in an FSK object |
run_simulation |
Run one simulation in an FSK object |
set_new_simulation |
Define a new simulation in an FSK2R object |
set_readme |
Readme of an FSK object |
update_manifest |
Updates the manifest file |