hoardeR-package |
Collect and Retrieve Annotation Data for Various Genomic Data Using Different Web Services. |
blastSeq |
Sending Genomic Sequences to NCBI Blast service |
coverageDensity |
Calculation of the coverage density |
findSpecies |
Search in the 'species'' Object. |
getAnnotation |
Downloading or Importing of Annotation Data |
getEnsgInfo |
Retrieve Gene Information From the NCBI Database. |
getFastaFromBed |
Get fasta information based on locations in bed-format |
getGeneLocation |
Extracting Gene Locations |
getGeneSeq |
Extracting a gene sequence from NCBI database. |
getSequenceFromNCBI |
Extracts a sequence from the NCBI webpage |
intersectXMLAnnot |
Intersect XML object with annotation object |
plotCoverage |
Plots a coverage density object |
plotHit |
Visualization of a cross-species hit |
print-method |
Print an fa Object |
print.fa |
Print an fa Object |
species |
Available species at NCBI |
subDose |
Rewrite the Dose File from a Beagle Output |
subGprobs |
Rewrite the Gprobs File from a Beagle Output |
subPhased |
Rewrite the Phased File from a Beagle Output |
summary-method |
Summarize an fa Object |
summary.fa |
Summarize an fa Object |
tableSpecies |
Tables the species in xml file |
targetScan |
Retrieving miRNA target information from targetscan.org |