CLONETv2-package |
CLONETv2 |
adm_table_toy |
Toy example of admixture table. |
allele_specific_cna_table_toy |
Toy example of allele specific table of somatic copy number. |
bt_toy |
Toy example of beta table. |
check_ploidy_and_admixture |
Function to compute ploidy from a beta table. |
compute_allele_specific_scna_table |
Function to compute allele specific somatic copy number |
compute_beta_table |
Function to compute beta table |
compute_dna_admixture |
Function to compute DNA admixture of a tumor sample from the associatd beta table and ploidy table |
compute_ploidy |
Function to compute ploidy from a beta table. |
compute_scna_clonality_table |
Function to compute clonality of somatic copy number data |
compute_snv_clonality |
Function to compute clonality of SNVs |
error_table |
Beta estimation error. |
pileup_normal_toy |
Toy example of normal pileup data. |
pileup_tumor_toy |
Toy example of tumor pileup data. |
pl_table_toy |
Toy example of ploidy table. |
scna_clonality_table_toy |
Toy example of clonality table of somatic copy number. |
seg_tb_toy |
Toy example of segmetd data. |
snv_clonality_table_toy |
Toy example of snv clonality table. |
snv_reads_toy |
Toy example of snv data. |