Clonality Estimates in Tumor

Documentation for package ‘CLONETv2’ version 2.2.1

CLONETv2-package	CLONETv2
adm_table_toy	Toy example of admixture table.
allele_specific_cna_table_toy	Toy example of allele specific table of somatic copy number.
bt_toy	Toy example of beta table.
check_ploidy_and_admixture	Function to compute ploidy from a beta table.
compute_allele_specific_scna_table	Function to compute allele specific somatic copy number
compute_beta_table	Function to compute beta table
compute_dna_admixture	Function to compute DNA admixture of a tumor sample from the associatd beta table and ploidy table
compute_ploidy	Function to compute ploidy from a beta table.
compute_scna_clonality_table	Function to compute clonality of somatic copy number data
compute_snv_clonality	Function to compute clonality of SNVs
error_table	Beta estimation error.
pileup_normal_toy	Toy example of normal pileup data.
pileup_tumor_toy	Toy example of tumor pileup data.
pl_table_toy	Toy example of ploidy table.
scna_clonality_table_toy	Toy example of clonality table of somatic copy number.
seg_tb_toy	Toy example of segmetd data.
snv_clonality_table_toy	Toy example of snv clonality table.
snv_reads_toy	Toy example of snv data.