'DrugBank' Database XML Parser


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Documentation for package ‘dbparser’ version 1.2.0

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A B C D E G L R T

-- A --

articles Drugs/ Carriers/ Enzymes/ Targets/ Transporters articles element parser
attachments Drugs/ Carriers/ Enzymes/ Targets/ Transporters attachments element parser

-- B --

books Drugs/ Carriers/ Enzymes/ Targets/ Transporters books element parser

-- C --

carriers Carriers/ Enzymes/ Targets/ Transporters parsers
carriers_actions Carriers/ Enzymes/ Targets/ Transporters Actions parsers
carriers_articles Drugs/ Carriers/ Enzymes/ Targets/ Transporters articles element parser
carriers_attachments Drugs/ Carriers/ Enzymes/ Targets/ Transporters attachments element parser
carriers_links Drugs/ Carriers/ Enzymes/ Targets/ Transporters links element parser
carriers_polypeptides Carriers/ Enzymes/ Targets/ Transporters Polypeptide parsers
carriers_polypeptides_go Carriers/ Enzymes/ Targets/ Transporters Polypeptide GO Classifier parsers
carriers_polypeptides_pfams Carriers/ Enzymes/ Targets/ Transporters Polypeptide PFAMS parsers
carriers_polypeptides_syn Carriers/ Enzymes/ Targets/ Transporters Polypeptide Synonyms parsers
carriers_polypep_ex_ident Carriers/ Enzymes/ Targets/ Transporters Polypeptide External Identifiers parsers
carriers_textbooks Drugs/ Carriers/ Enzymes/ Targets/ Transporters books element parser
cett Run all CETT related parsers
cett_actions_doc Carriers/ Enzymes/ Targets/ Transporters Actions parsers
cett_doc Carriers/ Enzymes/ Targets/ Transporters parsers
cett_ex_identity_doc Carriers/ Enzymes/ Targets/ Transporters Polypeptide External Identifiers parsers
cett_go_doc Carriers/ Enzymes/ Targets/ Transporters Polypeptide GO Classifier parsers
cett_poly_doc Carriers/ Enzymes/ Targets/ Transporters Polypeptide parsers
cett_poly_pfms_doc Carriers/ Enzymes/ Targets/ Transporters Polypeptide PFAMS parsers
cett_poly_syn_doc Carriers/ Enzymes/ Targets/ Transporters Polypeptide Synonyms parsers

-- D --

dbparser dbparser: A package for reading and parsing *DrugBank* xml database.
drugs Run all drug related parsers
drugs_articles Drugs/ Carriers/ Enzymes/ Targets/ Transporters articles element parser
drugs_attachments Drugs/ Carriers/ Enzymes/ Targets/ Transporters attachments element parser
drugs_links Drugs/ Carriers/ Enzymes/ Targets/ Transporters links element parser
drugs_textbooks Drugs/ Carriers/ Enzymes/ Targets/ Transporters books element parser
drug_affected_organisms Drug Affected Organism parser
drug_ahfs_codes Drug ahfs-codes parser
drug_atc_codes Drug ATC Codes element parser
drug_calc_prop Drug Calculated Properties parser
drug_categories Drug Categories parser
drug_classification Drug Classification parser
drug_dosages Drug Dosages parser
drug_element extracts the given drug elements and return data as list of tibbles.
drug_element_options returns 'drug_element' valid options.
drug_exp_prop Drug Experimental Properties parser
drug_external_links Drug External Links parser
drug_ex_identity Drug External Identifiers parser
drug_food_interactions Drug Groups parser
drug_general_information Drugs General Information parser
drug_groups Drug Groups parser
drug_interactions Drug Interactions parser
drug_intern_brand Drug International Brands parser
drug_manufacturers Drug Manufacturers parser
drug_mixtures Drug Mixtures parser
drug_packagers Drug Packagers parser
drug_patents Drug Patents parser A property right issued by the United States Patent and Trademark Office (USPTO) to an inventor for a limited time, in exchange for public disclosure of the invention when the patent is granted. Drugs may be issued multiple patents.
drug_pathway Drug Pathway parser
drug_pathway_drugs Drug Pathway Drugs parser
drug_pathway_enzyme Drug Pathway Enzymes parser
drug_pdb_entries Drug pdb-entries parser
drug_pharmacology Drug Pharmacology parser
drug_prices Drug Prices Parsers
drug_products Drug Products parser
drug_reactions Drug Reactions Parsers
drug_reactions_enzymes Drug Reactions Enzymes Parsers
drug_salts Drug Salts parser
drug_sequences Drug Sequences parser
drug_snp_adverse_reactions Drug SNP Adverse Drug Reactions parser
drug_snp_effects Drug SNP Effects parser
drug_syn Drug Synonyms parser

-- E --

enzymes Carriers/ Enzymes/ Targets/ Transporters parsers
enzymes_actions Carriers/ Enzymes/ Targets/ Transporters Actions parsers
enzymes_articles Drugs/ Carriers/ Enzymes/ Targets/ Transporters articles element parser
enzymes_attachments Drugs/ Carriers/ Enzymes/ Targets/ Transporters attachments element parser
enzymes_links Drugs/ Carriers/ Enzymes/ Targets/ Transporters links element parser
enzymes_polypeptides Carriers/ Enzymes/ Targets/ Transporters Polypeptide parsers
enzymes_polypeptides_go Carriers/ Enzymes/ Targets/ Transporters Polypeptide GO Classifier parsers
enzymes_polypeptides_pfams Carriers/ Enzymes/ Targets/ Transporters Polypeptide PFAMS parsers
enzymes_polypeptides_syn Carriers/ Enzymes/ Targets/ Transporters Polypeptide Synonyms parsers
enzymes_polypep_ex_ident Carriers/ Enzymes/ Targets/ Transporters Polypeptide External Identifiers parsers
enzymes_textbooks Drugs/ Carriers/ Enzymes/ Targets/ Transporters books element parser

-- G --

get_drugbank_exported_date Return uploaded drugbank database exported date
get_drugbank_metadata Return uploaded drugbank database metadata
get_drugbank_version Return uploaded drugbank database version

-- L --

links Drugs/ Carriers/ Enzymes/ Targets/ Transporters links element parser

-- R --

read_drugbank_xml_db Reads *DrugBank* xml database and load it into memory.
references Drugs/ Carriers/ Enzymes/ Targets/ Transporters references element parser
run_all_parsers extracts the all drug elements and return data as list of tibbles.

-- T --

targets Carriers/ Enzymes/ Targets/ Transporters parsers
targets_actions Carriers/ Enzymes/ Targets/ Transporters Actions parsers
targets_articles Drugs/ Carriers/ Enzymes/ Targets/ Transporters articles element parser
targets_attachments Drugs/ Carriers/ Enzymes/ Targets/ Transporters attachments element parser
targets_links Drugs/ Carriers/ Enzymes/ Targets/ Transporters links element parser
targets_polypeptides Carriers/ Enzymes/ Targets/ Transporters Polypeptide parsers
targets_polypeptides_go Carriers/ Enzymes/ Targets/ Transporters Polypeptide GO Classifier parsers
targets_polypeptides_pfams Carriers/ Enzymes/ Targets/ Transporters Polypeptide PFAMS parsers
targets_polypeptides_syn Carriers/ Enzymes/ Targets/ Transporters Polypeptide Synonyms parsers
targets_polypep_ex_ident Carriers/ Enzymes/ Targets/ Transporters Polypeptide External Identifiers parsers
targets_textbooks Drugs/ Carriers/ Enzymes/ Targets/ Transporters books element parser
transporters Carriers/ Enzymes/ Targets/ Transporters parsers
transporters_actions Carriers/ Enzymes/ Targets/ Transporters Actions parsers
transporters_articles Drugs/ Carriers/ Enzymes/ Targets/ Transporters articles element parser
transporters_attachments Drugs/ Carriers/ Enzymes/ Targets/ Transporters attachments element parser
transporters_links Drugs/ Carriers/ Enzymes/ Targets/ Transporters links element parser
transporters_polypeptides Carriers/ Enzymes/ Targets/ Transporters Polypeptide parsers
transporters_polypeptides_go Carriers/ Enzymes/ Targets/ Transporters Polypeptide GO Classifier parsers
transporters_polypeptides_pfams Carriers/ Enzymes/ Targets/ Transporters Polypeptide PFAMS parsers
transporters_polypeptides_syn Carriers/ Enzymes/ Targets/ Transporters Polypeptide Synonyms parsers
transporters_polypep_ex_ident Carriers/ Enzymes/ Targets/ Transporters Polypeptide External Identifiers parsers
transporters_textbooks Drugs/ Carriers/ Enzymes/ Targets/ Transporters books element parser