D3GB-package |
Interactive genome browsers with R |
createAssembly |
Creates a genome assembly for 'genomebrowser' or 'genomemap'. |
D3GB |
Interactive genome browsers with R |
gbk2genomebrowser |
Generates an interactive genome browser. |
genomebrowser |
Generates an interactive genome browser. |
genomemap |
Create an interative genome map. |
genome_addGFF |
Add track in a gff file to 'genomebrowser'. |
genome_addSequence |
Add genome sequence on Fasta format to 'genomebrowser'. |
genome_addTrack |
Add tracks to 'genomebrowser'. |
genome_addVCF |
Add VCF tracks to 'genomebrowser'. |
genome_createLocalMode |
Generates an interactive genome browser. |
genome_createServerMode |
Generates an interactive genome browser. |
getAssemblyFromFasta |
Create an assembly from a FASTA file for its use as parameter of 'genomebrowser' or 'genomemap'. |
GRCh37 |
Length of human chromosomes based on GRCh37 assembly |
GRCh37.bands |
Cytoband information based on GRCh37 |
GRCh38 |
Length of human chromosomes based on GRCh38 assembly |
GRCh38.bands |
Cytoband information based on GRCh38 |
NCBI36 |
Length of human chromosomes based on NCBI36 assembly |
segmentation |
Function for segmentate tracks in BED format. |