Multivariate Autoregressive State-Space Modeling

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Documentation for package ‘MARSS’ version 3.11.9

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

MARSS-package	Multivariate Autoregressive State-Space Model Estimation
accuracy	Return accuracy metrics
accuracy.marssMLE	Return accuracy metrics
accuracy.marssPredict	Return accuracy metrics
autoplot.marssMLE	Plot MARSS MLE objects
autoplot.marssPredict	Plot MARSS Forecast and Predict objects
autoplot.marssResiduals	Plot MARSS marssResiduals objects
coef.marssMLE	Coefficient function for MARSS MLE objects
CSEGriskfigure	Plot Extinction Risk Metrics
CSEGtmufigure	Plot Forecast Uncertainty
datasets	Example Data Sets
fitted.marssMLE	Return fitted values for X(t) and Y(t) in a MARSS model
forecast	predict and forecast MARSS MLE objects
forecast.marssMLE	forecast function for marssMLE objects
glance	Return brief summary information on a MARSS fit
glance.marssMLE	Return brief summary information on a MARSS fit
graywhales	Population Data Sets
grouse	Population Data Sets
harborSeal	Harbor Seal Population Count Data (Log counts)
harborSealWA	Harbor Seal Population Count Data (Log counts)
isleRoyal	Isle Royale Wolf and Moose Data
ivesDataByWeek	Plankton Data Sets
ivesDataLP	Plankton Data Sets
kestrel	Population Data Sets
lakeWAplankton	Plankton Data Sets
lakeWAplanktonRaw	Plankton Data Sets
lakeWAplanktonTrans	Plankton Data Sets
ldiag	Return a diagonal list matrix
loggerhead	Loggerhead Turtle Tracking Data
loggerheadNoisy	Loggerhead Turtle Tracking Data
logLik	logLik method for MARSS MLE objects
logLik.marssMLE	logLik method for MARSS MLE objects
MARSS	Fit a MARSS Model via Maximum-Likelihood Estimation
MARSS.dfa	Multivariate Dynamic Factor Analysis
MARSS.marss	Multivariate AR-1 State-space Model
MARSS.marxss	Multivariate AR-1 State-space Model with Inputs
MARSS.vectorized	Vectorized Multivariate AR-1 State-space Model
MARSSaic	AIC for MARSS Models
MARSSboot	Bootstrap MARSS Parameter Estimates
MARSScv	MARSScv is a wrapper for MARSS that re-fits the model with cross validated data.
MARSSFisherI	Observed Fisher Information Matrix at the MLE
MARSSfit	Generic for fitting MARSS models
MARSSharveyobsFI	Hessian Matrix via the Harvey (1989) Recursion
MARSShatyt	Compute Expected Value of Y, YY, and YX
MARSShessian	Parameter Variance-Covariance Matrix from the Hessian Matrix
MARSShessian.numerical	Hessian Matrix via Numerical Approximation
MARSSinfo	MARSS Error Messages and Warnings
MARSSinits	Initial Values for MLE
MARSSinnovationsboot	Bootstrapped Data using Stoffer and Wall's Algorithm
MARSSkem	EM Algorithm function for MARSS models
MARSSkf	Kalman Filtering and Smoothing
MARSSkfas	Kalman Filtering and Smoothing
MARSSkfss	Kalman Filtering and Smoothing
marssMLE	Class "marssMLE"
marssMODEL	Class "marssMODEL"
MARSSoptim	Parameter estimation for MARSS models using optim
MARSSparamCIs	Standard Errors, Confidence Intervals and Bias for MARSS Parameters
marssPredict	Class "marssPredict"
MARSSresiduals	MARSS Residuals
marssResiduals	Class "marssResiduals"
MARSSresiduals.tT	MARSS Smoothed Residuals
MARSSresiduals.tt	MARSS Contemporaneous Residuals
MARSSresiduals.tt1	MARSS One-Step-Ahead Residuals
MARSSsimulate	Simulate Data from a MARSS Model
okanaganRedds	Population Data Sets
plankton	Plankton Data Sets
plot.marssMLE	Plot MARSS MLE objects
plot.marssPredict	Plot MARSS Forecast and Predict objects
plot.marssResiduals	Plot MARSS marssResiduals objects
population-count-data	Population Data Sets
prairiechicken	Population Data Sets
predict	predict and forecast MARSS MLE objects
predict.marssMLE	predict and forecast MARSS MLE objects
print.marssMLE	Printing functions for MARSS MLE objects
print.marssMODEL	Printing marssMODEL Objects
print.marssPredict	Printing function for MARSS Predict objects
redstart	Population Data Sets
residuals.marssMLE	Model and state fitted values, residuals, and residual sigma
rockfish	Population Data Sets
SalmonSurvCUI	Salmon Survival Indices
simulate.marssMLE	Simulate Data from a MARSS Model
summary.marssMLE	Summary methods for marssMLE objects
summary.marssMODEL	Printing marssMODEL Objects
tidy	Return estimated parameters with summary information
tidy.marssMLE	Return estimated parameters with summary information
toLatex.marssMLE	Create a LaTeX Version of the Model
toLatex.marssMODEL	Create a LaTeX Version of the Model
tsSmooth	Smoothed and filtered x and y time series
tsSmooth.marssMLE	Smoothed and filtered x and y time series
wilddogs	Population Data Sets
zscore	z-score a vector or matrix