MARSS-package |
Multivariate Autoregressive State-Space Model Estimation |
accuracy |
Return accuracy metrics |
accuracy.marssMLE |
Return accuracy metrics |
accuracy.marssPredict |
Return accuracy metrics |
autoplot.marssMLE |
Plot MARSS MLE objects |
autoplot.marssPredict |
Plot MARSS Forecast and Predict objects |
autoplot.marssResiduals |
Plot MARSS marssResiduals objects |
coef.marssMLE |
Coefficient function for MARSS MLE objects |
CSEGriskfigure |
Plot Extinction Risk Metrics |
CSEGtmufigure |
Plot Forecast Uncertainty |
datasets |
Example Data Sets |
fitted.marssMLE |
Return fitted values for X(t) and Y(t) in a MARSS model |
forecast |
predict and forecast MARSS MLE objects |
forecast.marssMLE |
forecast function for marssMLE objects |
glance |
Return brief summary information on a MARSS fit |
glance.marssMLE |
Return brief summary information on a MARSS fit |
graywhales |
Population Data Sets |
grouse |
Population Data Sets |
harborSeal |
Harbor Seal Population Count Data (Log counts) |
harborSealWA |
Harbor Seal Population Count Data (Log counts) |
isleRoyal |
Isle Royale Wolf and Moose Data |
ivesDataByWeek |
Plankton Data Sets |
ivesDataLP |
Plankton Data Sets |
kestrel |
Population Data Sets |
lakeWAplankton |
Plankton Data Sets |
lakeWAplanktonRaw |
Plankton Data Sets |
lakeWAplanktonTrans |
Plankton Data Sets |
ldiag |
Return a diagonal list matrix |
loggerhead |
Loggerhead Turtle Tracking Data |
loggerheadNoisy |
Loggerhead Turtle Tracking Data |
logLik |
logLik method for MARSS MLE objects |
logLik.marssMLE |
logLik method for MARSS MLE objects |
MARSS |
Fit a MARSS Model via Maximum-Likelihood Estimation |
MARSS.dfa |
Multivariate Dynamic Factor Analysis |
MARSS.marss |
Multivariate AR-1 State-space Model |
MARSS.marxss |
Multivariate AR-1 State-space Model with Inputs |
MARSS.vectorized |
Vectorized Multivariate AR-1 State-space Model |
MARSSaic |
AIC for MARSS Models |
MARSSboot |
Bootstrap MARSS Parameter Estimates |
MARSScv |
MARSScv is a wrapper for MARSS that re-fits the model with cross validated data. |
MARSSFisherI |
Observed Fisher Information Matrix at the MLE |
MARSSfit |
Generic for fitting MARSS models |
MARSSharveyobsFI |
Hessian Matrix via the Harvey (1989) Recursion |
MARSShatyt |
Compute Expected Value of Y, YY, and YX |
MARSShessian |
Parameter Variance-Covariance Matrix from the Hessian Matrix |
MARSShessian.numerical |
Hessian Matrix via Numerical Approximation |
MARSSinfo |
MARSS Error Messages and Warnings |
MARSSinits |
Initial Values for MLE |
MARSSinnovationsboot |
Bootstrapped Data using Stoffer and Wall's Algorithm |
MARSSkem |
EM Algorithm function for MARSS models |
MARSSkf |
Kalman Filtering and Smoothing |
MARSSkfas |
Kalman Filtering and Smoothing |
MARSSkfss |
Kalman Filtering and Smoothing |
marssMLE |
Class "marssMLE" |
marssMODEL |
Class "marssMODEL" |
MARSSoptim |
Parameter estimation for MARSS models using optim |
MARSSparamCIs |
Standard Errors, Confidence Intervals and Bias for MARSS Parameters |
marssPredict |
Class "marssPredict" |
MARSSresiduals |
MARSS Residuals |
marssResiduals |
Class "marssResiduals" |
MARSSresiduals.tT |
MARSS Smoothed Residuals |
MARSSresiduals.tt |
MARSS Contemporaneous Residuals |
MARSSresiduals.tt1 |
MARSS One-Step-Ahead Residuals |
MARSSsimulate |
Simulate Data from a MARSS Model |
okanaganRedds |
Population Data Sets |
plankton |
Plankton Data Sets |
plot.marssMLE |
Plot MARSS MLE objects |
plot.marssPredict |
Plot MARSS Forecast and Predict objects |
plot.marssResiduals |
Plot MARSS marssResiduals objects |
population-count-data |
Population Data Sets |
prairiechicken |
Population Data Sets |
predict |
predict and forecast MARSS MLE objects |
predict.marssMLE |
predict and forecast MARSS MLE objects |
print.marssMLE |
Printing functions for MARSS MLE objects |
print.marssMODEL |
Printing marssMODEL Objects |
print.marssPredict |
Printing function for MARSS Predict objects |
redstart |
Population Data Sets |
residuals.marssMLE |
Model and state fitted values, residuals, and residual sigma |
rockfish |
Population Data Sets |
SalmonSurvCUI |
Salmon Survival Indices |
simulate.marssMLE |
Simulate Data from a MARSS Model |
summary.marssMLE |
Summary methods for marssMLE objects |
summary.marssMODEL |
Printing marssMODEL Objects |
tidy |
Return estimated parameters with summary information |
tidy.marssMLE |
Return estimated parameters with summary information |
toLatex.marssMLE |
Create a LaTeX Version of the Model |
toLatex.marssMODEL |
Create a LaTeX Version of the Model |
tsSmooth |
Smoothed and filtered x and y time series |
tsSmooth.marssMLE |
Smoothed and filtered x and y time series |
wilddogs |
Population Data Sets |
zscore |
z-score a vector or matrix |