Finds RNASeq Source Tissues Using In Situ Hybridisation Data

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Documentation for package ‘cellOrigins’ version 0.1.3

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cellOrigins-package Finding the most likely originating tissue(s) and developmental stage(s) of RNASeq data
BDGP_insitu_dmel_embryo Patterns of gene expression in Drosophila melanogaster embryos
cellOrigins Finding the most likely originating tissue(s) and developmental stage(s) of RNASeq data
diagnosticPlots Diagnostic plots to explore seqVsInsitu results
diagnosticPlots.list Diagnostic plots to explore seqVsInsitu results
diagnosticPlots.matrix Diagnostic plots to explore seqVsInsitu results
discovery.identic Calculates discovery probability by RNA in situ hybridisation given a sequencing signal
discovery.linear Calculates discovery probability by RNA in situ hybridisation given a sequencing signal
discovery.log Calculates discovery probability by RNA in situ hybridisation given a sequencing signal
discovery_probability In situ discovery probability as a function of FPKM
iterating_seqVsInsitu Faster comparisons between mixed tissue-specific RNA sequencing data and high-throughput RNA in situ hybridisation
prior.all_equal Assign a prior probability to a combination of anatomical terms
prior.temporal_proximity_is_good Assign a prior probability to a combination of anatomical terms
seqVsInsitu Determine the most likely source(s) of a tissue-specific RNAseq dataset
vncMedianCoverage Drosophila melanogaster embryo ventral nerve cord RNASeq coverage