Tools, Classes, and Methods for Interfacing with 'SaTScan' Stand-Alone Software

[Up] [Top]

Documentation for package ‘rsatscan’ version 1.0.7

Help Pages

rsatscan-package R functions, a class, and methods for working with SaTScan stand-alone software.
charlistopts Change list version of paramaters into char vector
NHumbersidecas North Humberside leukemian and lymphoma example- cases
NHumbersidectl North Humberside leukemian and lymphoma example- controls
NHumbersidegeo North Humberside leukemian and lymphoma example- geography
NMcas New Mexico Brain Cancer example- cases
NMgeo New Mexico Brain Cancer example- geography
NMpop New Mexico Brain Cancer example- population
NYCfevercas New York City Fever example- cases
NYCfevergeo New York City Fever example- geography
print.satscan Methods for satscan-class objects
read.col Read SaTScan output files
read.gis Read SaTScan output files
read.llr Read SaTScan output files
read.rr Read SaTScan output files
read.satscanmain Read SaTScan output files
read.sci Read SaTScan output files
rsatscan R functions, a class, and methods for working with SaTScan stand-alone software.
satscan Run SaTScan in the OS
search_for_param find earliest SaTScan parameter set that contains specified parameter
ss.options Set or reset parameters to be used by SaTScan
ss.options.extra Add lines to the current SaTScan parameter list
subin Substitute new values into the input object
summary.satscan Methods for satscan-class objects
write.adj Write a SaTScan adj file
write.cas Write a SaTScan cas (case) file
write.ctl Write a SaTScan ctl (control) file
write.geo Write a SaTScan geo file
write.grd Write a SaTScan grd (grid) file
write.ha Write a SaTScan ha (alternative hypothesis) file
write.max Write a SaTScan max file
write.met Write a SaTScan met file
write.nbr Write a SaTScan nbr (neighbor) file
write.ntk Write a SaTScan ntk (network) file
write.pop Write a SaTScan pop (population) file
write.ss.prm Write the SaTScan parameter file