arrange.vars |
Re-ordering columns in dataframes: |
cbindna |
qpcR cbind.na method. |
clustergram |
Clustergram base function |
clustergram.cmeans |
cmeans function for clustergram |
clustergram.cmeans.Ind |
cmeans clustering with fuzzy indices computation for clustergram |
clustergram.kmeans |
Type function that clustergram takes for clustering. |
clustergram.plot.matlines |
Plot function for clustergram |
clustergram.vegclust |
Vegclust function for clustergram |
clustergram.vegclust.Ind |
Vegclust clustering with fuzzy indices computation for clustergram |
clustergramInd |
Clustergram with fuzzy indices plot |
CommunityColor |
Tool to assign color to species distribution plots given fuzzy clustering results. |
curveNoPlot |
Adaptation of the curve function (without plot). |
DistEco |
Tools for internal data structure exploration |
EcotoneFinder |
Wraper function to perform ecological gradient analysis |
EcotoneFinderSeries |
Extension of EcotoneFinder for space/time series |
ExtractCentroid |
Visualisation of fuzzy centroids: |
FuzzyIndice.plot.matlines |
Plot function for fuzzy indices with clustergram. |
ggEcotone |
GGplot method for EcotoneFinder |
NetworkCommunity |
Perform Spinglass algorythm and find networks communities |
NetworkEco |
Networks for ecotones and communities |
NetworkEcoSeries |
Networkeco for data series |
plotEco |
Plotting component for EcotoneFinder |
plotEcotone |
Plot method for EcotoneFinder |
plotEnv |
Plotting component for EcotoneFinder when run on environmental data |
plotSlope |
Plotting component for Slope |
rbindna |
qpcR rbind.na method. |
Slope |
Method to calculate the derivative of irregular functions: |
SyntheticData |
Create synthetic gaussian-shaped species abundance data |
SyntheticDataSeries |
Synthetic data for Space/Time series |