Statistical Inference for Systems of Ordinary Differential Equations using Separable Integral-Matching


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Documentation for package ‘simode’ version 1.2.2

Help Pages

confint.profile.simode Calculates confidence intervals for the model parameters
plot.confint.simode Plot confidence intervals for the model parameters
plot.list.simode Plot the fit/estimates of a 'list.simode' object
plot.profile.simode Plot the likelihood profiles for the model parameters
plot.simode Plot the fit/estimates of a 'simode' object
plot_trace Plot optimization trace of a call to 'simode'
print.confint.simode Print method for 'confint.simode' objects
print.profile.simode Print method for 'profile.simode' objects
print.simode Print method for 'simode' objects
print.summary.simode Print method for 'summary.simode' objects
profile.simode Calculate likelihood profiles for the model parameters
simode Statistical inference of ordinary differential equations using separable integral-matching
simode.control Class containing control parameters for a call to 'simode'
sir_example Example dataset for a multi-group SIR model
solve_ode Ordinary differential equations solver
summary.list.simode Summary method for 'list.simode' objects
summary.simode Summary method for 'simode' objects