Learning Sparse Log-Ratios for Compositional Data
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Documentation for package ‘codacore’ version 0.0.4
Help Pages
| activeInputs.codacore | activeInputs |
| codacore | codacore |
| Crohn | Microbiome composition related to Crohn's disease study |
| FranzosaMetabolite | Metabolite relative abundances (Franzosa et al., 2019) |
| FranzosaMicrobiome | Micriobiome relative abundances (Franzosa et al., 2019) |
| getBinaryPartitions | getBinaryPartitions |
| getDenominatorParts | getDenominatorParts |
| getLogRatios | getLogRatios |
| getNumeratorParts | getNumeratorParts |
| getNumLogRatios | getNumLogRatios |
| getSlopes | getSlopes |
| getTidyTable | getTidyTable |
| HIV | Microbiome, HIV infection and MSM factor |
| plot.codacore | plot |
| plotROC | plotROC |
| predict.codacore | predict |
| print.codacore | |
| sCD14 | Microbiome and sCD14 inflammation parameter |
| simulateHTS | simulateHTS |