Incidence Estimation Tools

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Documentation for package ‘inctools’ version 1.0.15

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

inctools-package	inctools: A Package for Incidence Estimation
excalibdata	The dataset 'excalibdata.Rdata' contains example data from an evaluation of an assay measuring recency of infection. At an assay result of <10, the specimen is considered to be recently infected. It further contains viral load data, which is commonly used to reduce false recency. For example, when recency is defined as assay result <10 and viral load > 1000, the FRR is substantially lower (but the MDRI is also reduced).
frrcal	Estimate False-Recent Rate
inccounts	Incidence and incidence difference statistics from trinomial counts of HIV and recency
incpower	Power and Required Sample Size
incprecision	Precision and Required Sample Size
incprops	Incidence and incidence difference statistics from trinomial prevalences of HIV and recency
inctools	inctools: A Package for Incidence Estimation
mdrical	Estimate Mean Duration of Recent Infection (MDRI)
prevcounts	Prevalence and Relative Standard Errors by Counts