| .RTIGER |
This class is a generic container for RTIGER analysis |
| ATseqlengths |
The autosome chromosome lengths for Arabidopsis Thaliana. |
| calcCOnumber |
Obtain number of Cross-Over events per sample and chromosome. |
| dev |
Function to developers. It runs one EM step |
| fit |
Call Julia code to fit the values |
| generateObject |
Load data |
| myDat |
A fitted example using three own samples of Arabidopsis. More information in publication: |
| optimize_R |
Find the otimum R value for a given data set |
| plotCOs |
Obtain number of Cross-Over events per sample and chromosome. |
| RTIGER |
Load, Fit, and plot |
| RTIGER-class |
This class is a generic container for RTIGER analysis |
| setupJulia |
Installs the needed packages in JULIA to run the EM algorithm for rHMM. |
| sourceJulia |
Function needed before using RTIGER() function. It loads the scripts in Julia that fit the rHMM. |
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