HTRX-package |
HTRX: Haplotype Trend Regression with eXtra flexibility |
computeR2 |
Compute variance explained by models |
data_split |
Data split |
do_cumulative_htrx |
Cumulative HTRX on long haplotypes |
do_cumulative_htrx_step1 |
Cumulative HTRX on long haplotypes |
do_cv |
Two-stage HTRX: Model selection on short haplotypes |
do_cv_direct |
Direct HTRX: k-fold cross-validation on short haplotypes |
do_cv_step1 |
Two-stage HTRX: Model selection on short haplotypes |
example_data_nosnp |
Example covariate data |
example_hap1 |
Example genotype data for the first genome |
example_hap2 |
Example genotype data for the second genome |
extend_haps |
Cumulative HTRX on long haplotypes |
HTRX |
HTRX: Haplotype Trend Regression with eXtra flexibility |
htrx_max |
Maximum independent features for HTRX |
htrx_nfeatures |
Total number of features for HTRX |
infer_fixedfeatures |
Two-stage HTRX: Model selection on short haplotypes |
infer_step1 |
Two-stage HTRX: Model selection on short haplotypes |
kfold_split |
Data split |
make_cumulative_htrx |
Cumulative HTRX on long haplotypes |
make_htr |
Generate haplotype data |
make_htrx |
Generate haplotype data |
make_snp |
Generate haplotype data |
mypredict |
Compute variance explained by models |
themodel |
Model fitting |
twofold_split |
Data split |