Haplotype Trend Regression with eXtra Flexibility (HTRX)

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Documentation for package ‘HTRX’ version 1.2.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

HTRX-package	HTRX: Haplotype Trend Regression with eXtra flexibility
computeR2	Compute variance explained by models
data_split	Data split
do_cumulative_htrx	Cumulative HTRX on long haplotypes
do_cumulative_htrx_step1	Cumulative HTRX on long haplotypes
do_cv	Two-stage HTRX: Model selection on short haplotypes
do_cv_direct	Direct HTRX: k-fold cross-validation on short haplotypes
do_cv_step1	Two-stage HTRX: Model selection on short haplotypes
example_data_nosnp	Example covariate data
example_hap1	Example genotype data for the first genome
example_hap2	Example genotype data for the second genome
extend_haps	Cumulative HTRX on long haplotypes
HTRX	HTRX: Haplotype Trend Regression with eXtra flexibility
htrx_max	Maximum independent features for HTRX
htrx_nfeatures	Total number of features for HTRX
infer_fixedfeatures	Two-stage HTRX: Model selection on short haplotypes
infer_step1	Two-stage HTRX: Model selection on short haplotypes
kfold_split	Data split
make_cumulative_htrx	Cumulative HTRX on long haplotypes
make_htr	Generate haplotype data
make_htrx	Generate haplotype data
make_snp	Generate haplotype data
mypredict	Compute variance explained by models
themodel	Model fitting
twofold_split	Data split