Individual Based Model Population Simulation

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Documentation for package ‘IBMPopSim’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

add_characteristic	Generic method for add_characteristic
add_characteristic.population	Add characteristic to a population
age_pyramid	Generic method for age_pyramid
age_pyramid.population	Age pyramid from a population at a given time.
age_pyramids	Generic method for age_pyramids
age_pyramids.population	Age pyramid from a population data frame at some given times.
check_intensity_code	Check the intensity code.
check_interaction_code	Check the interaction code.
check_kernel_code	Check the kernel code.
compatibility_chars_events	Check characteristics-events compatibility
compatibility_pop_model	Check population-model compatibility
death_table	Death table
EWdata_hmd	England and Wale mortality data (source: Human Mortality Database)
EW_popIMD_14	England and Wales (EW) 2014 population and death rates by Index of Multiple Deprivation (IMD).
EW_pop_14	England and Wales (EW) 2014 population, death and birth rates.
EW_pop_out	Example of "human population" after 100 years of simulation.
exposure_table	Exposure table
get_characteristics	Generic method for get_characteristics
get_characteristics.population	Returns names and C types of the characteristics.
gompertz	Gompertz–Makeham intensity function.
linfun	Linear interpolation function.
max.stepfun	Returns the maximum of a function of class 'stepfun'.
merge_pop_withid	A function returning a merged dataframe from a list of population dataframes with id.
mk_event_individual	Creating an event with intensity of class individual
mk_event_inhomogeneous_poisson	Creating inhomogeneous Poisson class event
mk_event_interaction	Creating an event with intensity of type interaction
mk_event_poisson	Creating Poisson class event
mk_model	Creates a model for IBMPopSim.
piecewise_x	Piecewise real function.
piecewise_xy	Piecewise real function of two variables.
plot.population	Plot the age pyramid of a population data frame (at a given time).
plot.pyramid	Plot an age pyramid.
popsample	Generic method for popsample
popsample.pyramid	Sample a population from an age pyramid (at a given time).
popsim	Simulation of a model.
population	Class population
population_alive	Generic method for population_alive
population_alive.population	Returns a population of individuals alive.
print.event	Print Event
print.model	Printing of a model
print.population	Printing population
pyramid	Class pyramid
stepfun	Step Function.
summary.event	Summarizing an event
summary.logs	Summary logs
summary.model	Summary of a model
summary.population	Summary population
summary.simulation_output	Summary simulation output
toy_params	Toy parameters for IBMPopSim-human_popIMD vignette example.
weibull	Weibull function.