Joint Segmentation of Multivariate (Copy Number) Signals

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Documentation for package ‘jointseg’ version 1.0.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

binMissingValues	binMissingValues
doCBS	Run CBS segmentation
doDynamicProgramming	Run segmentation by dynamic programming
doGFLars	Group fused Lars segmentation
doPSCBS	Run Paired PSCBS segmentation
doPSCN	Run PSCN segmentation (defunct)
doRBS	Run RBS segmentation
estimateSd	Robust standard deviation estimator
Fpsn	Pruned dynamic programming algorithm
getCopyNumberDataByResampling	Generate a copy number profile by resampling
getTpFp	Calculate the number of true positives and false positives
jointSeg	Joint segmentation of multivariate signals
mapPositionsBack	mapPositionsBack
modelSelection	Model selection
plotSeg	Plot signal and breakpoints with segment-level signal estimates
pruneByDP	Exact segmentation of a multivariate signal using dynamic programming.
PSSeg	Parent-Specific copy number segmentation
randomProfile	Generate a random multi-dimensional profile with breakpoints and noise
retour_sn	Extract endpoint matrix from DP result
segmentByGFLars	Group fused Lars segmentation (low-level)
segmentByRBS	Recursive Binary Segmentation (low-level)