Spatial Analysis of Vectra Immunoflourescent Data

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Documentation for package ‘spatialTIME’ version 1.3.4-5

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

bi_NN_G	Bivariate Nearest Neighbor G(r)
bi_pair_correlation	Bivariate Pair Correlation Function
bi_ripleys_k	Bivariate Ripley's K
bi_ripleys_k_WSI	Bivariate Ripley's K for Whole Slide Images
compute_metrics	Calculate Count Based Measures and NN Measures of Spatial Clustering for IF data
create_mif	Create Multiplex Immunoflourescent object
dixons_s	Dixon's S Segregation Statistic
example_clinical	Clinical variables of 229 patients
example_spatial	Example list of 5 spatial TMA data
example_summary	Marker summaries of 229 samples
interaction_variable	Bivariate Interaction Variable
merge_mifs	Merge several MIF objects together
NN_G	Univariate Nearest Neighbor G(r)
pair_correlation	Univariate Pair Correlation Function
plot_immunoflo	Generate plot of TMA point process
ripleys_k	Calculate Ripley's K
subset_mif	Subset mif object on cellular level