Phylogenies for a List of Finned-Ray Fishes

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Documentation for package ‘FishPhyloMaker’ version 0.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

FishPhyloMaker	Obtaining fish phylogeny according to a local pool of species
FishTaxaMaker	Generate a list of species Auxiliary function to obtain taxonomic classification and check the names of species present in species pool
neotropical_comm	Abundance of stream fish species in Parana and Paraguay streams
PD_defict	Title Calculate the amount of phylogenetic deficit in assemblages
spp_afrotropic	List of fish species with occurrence in Afrotropical ecoregion
taxon_data_PhyloMaker	Data frame with species names needed to assemble the phylogenetic tree
whichFishAdd	Function to inform which species must be added to the mega-tree phylogeny in the insertion process.