aSPU | Sum of Powered Score (SPU) tests and adaptive SPU (aSPU) test for single trait - SNP set association. |

aSPUd | Adaptive Sum of powered score (SPU) tests (SPU and aSPU) based on asymptotic distribution. |

aSPUpath | Pathway based Sum of Powered Score tests (SPUpath) and adaptive SPUpath (aSPUpath) test for single trait - pathway association. |

aSPUpath2 | Pathway based Sum of Powered Score tests (SPUpath) and adaptive SPUpath (aSPUpath) test for single trait - pathway association. (vector version, fast when n is large) |

aSPUr | Robust Sum of powered score (SPU) tests and aSPU test for a quantitative trait |

aSPUs | Sum of Powered Score (SPUs) tests and adaptive SPU (aSPUs) test for single trait - SNP set association with GWAS summary statistics. |

aSPUsD | Sum of Powered Score (SPUs) tests and adaptive SPU (aSPUs) test for single trait - SNP set association with GWAS summary statistics (distribution based). |

aSPUsPath | Pathway based Sum of Powered Score tests (SPUsPath) and adaptive SPUpath (aSPUsPath) test for single trait - pathway association with GWAS summary statistics. |

aSPUsPath2 | Pathway based Sum of Powered Score tests (SPUsPath) and adaptive SPUpath (aSPUsPath) test for single trait - pathway association with GWAS summary statistics. (vector version, fast when n is large) |

aSPUw | Inverse variance weighted Sum of Powered Score tests (SPUw) and adaptive SPUw (aSPUw) test for single trait - SNP set association. |

estcov | estcov |

exdat | An example data set |

GATES2 | Gene-based Association Test that uses an extended Simes procedure (GATES) for single trait - SNP set association |

GatesSimes | GATES-Simes test for single trait - pathway association. |

GEEaSPU | The SPU and aSPU tests for multiple traits - single SNP association in generalized estimating equations. |

getlogitp | Get the p-values of the multiple SNPs based on the Wald test in a logistic regresion model. |

Hyst | HYST (Hybrid Set-based Test) for single trait - pathway association |

kegg9 | A subset of coronary artery disease (CAD) data |

minP | minP test. |

MTaSPUs | The SPU and aSPU tests for multiple traits - single SNP association with GWAS summary statistics. |

MTaSPUsSet | gene-Multitrait Sum of Powered Score (MTSPUsSet) tests and adaptive MTSPUsSet (MTaSPUsSet) test for multi trait - SNP set association with GWAS summary statistics. |

MTaSPUsSetPath | Multitraits - Pathway based Sum of Powered Score tests (MTSPUsSetPath) and adaptive MTSPUsSetpath (MTaSPUsSetPath) test for multi trait - pathway association with GWAS summary statistics. |

MTaSPUsSetScore | gene-Multitrait Sum of Powered Score (MTSPUsSetScore) tests and adaptive MTSPUsSet (MTaSPUsSet) test for multi trait - SNP set association with GWAS summary statistics. (Score version added) |

plotPmat | Image plot of P-value matrix. |

pruneSNP | Prune SNPs (related to aSPUs, aSPUsPath, MTaSPUsSet) |

SAMD11 | An example data for MTaSPUsSet test |

simPathAR1Snp | Simulating a pathway with multiple SNPs. |

someGs | An example data for MTaSPUsSet test |