| aSPU |
Sum of Powered Score (SPU) tests and adaptive SPU (aSPU) test for single trait - SNP set association. |
| aSPUd |
Adaptive Sum of powered score (SPU) tests (SPU and aSPU) based on asymptotic distribution. |
| aSPUpath |
Pathway based Sum of Powered Score tests (SPUpath) and adaptive SPUpath (aSPUpath) test for single trait - pathway association. |
| aSPUpath2 |
Pathway based Sum of Powered Score tests (SPUpath) and adaptive SPUpath (aSPUpath) test for single trait - pathway association. (vector version, fast when n is large) |
| aSPUr |
Robust Sum of powered score (SPU) tests and aSPU test for a quantitative trait |
| aSPUs |
Sum of Powered Score (SPUs) tests and adaptive SPU (aSPUs) test for single trait - SNP set association with GWAS summary statistics. |
| aSPUsD |
Sum of Powered Score (SPUs) tests and adaptive SPU (aSPUs) test for single trait - SNP set association with GWAS summary statistics (distribution based). |
| aSPUsPath |
Pathway based Sum of Powered Score tests (SPUsPath) and adaptive SPUpath (aSPUsPath) test for single trait - pathway association with GWAS summary statistics. |
| aSPUsPath2 |
Pathway based Sum of Powered Score tests (SPUsPath) and adaptive SPUpath (aSPUsPath) test for single trait - pathway association with GWAS summary statistics. (vector version, fast when n is large) |
| aSPUw |
Inverse variance weighted Sum of Powered Score tests (SPUw) and adaptive SPUw (aSPUw) test for single trait - SNP set association. |
| estcov |
estcov |
| exdat |
An example data set |
| GATES2 |
Gene-based Association Test that uses an extended Simes procedure (GATES) for single trait - SNP set association |
| GatesSimes |
GATES-Simes test for single trait - pathway association. |
| GEEaSPU |
The SPU and aSPU tests for multiple traits - single SNP association in generalized estimating equations. |
| getlogitp |
Get the p-values of the multiple SNPs based on the Wald test in a logistic regresion model. |
| Hyst |
HYST (Hybrid Set-based Test) for single trait - pathway association |
| kegg9 |
A subset of coronary artery disease (CAD) data |
| minP |
minP test. |
| MTaSPUs |
The SPU and aSPU tests for multiple traits - single SNP association with GWAS summary statistics. |
| MTaSPUsSet |
gene-Multitrait Sum of Powered Score (MTSPUsSet) tests and adaptive MTSPUsSet (MTaSPUsSet) test for multi trait - SNP set association with GWAS summary statistics. |
| MTaSPUsSetPath |
Multitraits - Pathway based Sum of Powered Score tests (MTSPUsSetPath) and adaptive MTSPUsSetpath (MTaSPUsSetPath) test for multi trait - pathway association with GWAS summary statistics. |
| MTaSPUsSetScore |
gene-Multitrait Sum of Powered Score (MTSPUsSetScore) tests and adaptive MTSPUsSet (MTaSPUsSet) test for multi trait - SNP set association with GWAS summary statistics. (Score version added) |
| plotPmat |
Image plot of P-value matrix. |
| pruneSNP |
Prune SNPs (related to aSPUs, aSPUsPath, MTaSPUsSet) |
| SAMD11 |
An example data for MTaSPUsSet test |
| simPathAR1Snp |
Simulating a pathway with multiple SNPs. |
| someGs |
An example data for MTaSPUsSet test |
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)