Utilities for Working with NEON Data

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Documentation for package ‘neonUtilities’ version 2.4.2

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byFileAOP Serially download all AOP files for a given site, year, and product
byTileAOP Download AOP tiles overlapping specified coordinates for a given site, year, and product
chem_bundles Bundled chemistry data product information
convByteSize Convert a number of bytes into megabytes or gigabytes
footRaster Extract eddy covariance footprint data from HDF5 format
getAPI Get the data from API
getAPIHeaders Get only headers from API
getAvg Get a list of the available averaging intervals for a data product
getCitation Get a Bibtex citation for NEON data with a DOI, or generate a provisional Bibtex citation
getDatatable Get NEON data table
getEddyLog Get the full issue log set for the SAE bundle
getFileUrls Get and store the file names, S3 URLs, file size, and download status (default = 0) in a data frame
getIssueLog Get the issue log for a specific data product
getNeonDOI Get either a list of NEON DOIs, or the DOI for a specific data product and release
getPackage Get NEON data package
getProductInfo Get NEON data product information
getProductSensors Get data product-sensor relationships
getReadmePublicationDate Scrape the publication date from each ReadMe file
getRecentPublication Returns the most recent files for those that do not need stacking
getTaxonTable Get NEON taxon table
getTileUrls Get and store the file names, S3 URLs, file size, and download status (default = 0) in a data frame
getTimeIndex Get a list of the available time intervals for a data product
getVarsEddy Extract list of eddy covariance tables from HDF5 files
getZipUrls Get and store the file names, S3 URLs, file size, and download status (default = 0) in a data frame
listFilesInZip Get a data frame with the names of all files within a zipped NEON data package
listZipfiles Get all zip file names within a zipped NEON data package
loadByProduct Get files from NEON API, stack tables, and load into the current environment
other_bundles Bundled vegetation and sediment data product information
quietMessages Will suppress all output messages, while retaining the output dataframe
readTableNEON Read a NEON data table with correct data types for each variable
shared_aquatic Terrestrial-aquatic shared data information
shared_flights Flight coverage information
stackByTable Join data files in a zipped NEON data package by table type
stackDataFilesParallel Join data files in a unzipped NEON data package by table type
stackEddy Extract eddy covariance data from HDF5 format
stackFromStore Select files from a stored set of NEON data, created by neonstore package methods or another method
table_types Publication table information
transformFileToGeoCSV Transform NEON CSV file to GeoCSV
unzipZipfileParallel Unzip a zip file either at just the top level or recursively through the file
zipsByProduct Get files from NEON API to feed the stackByTable() function
zipsByURI Get files from NEON ECS Bucket using URLs in stacked data