Bayesian Network Meta-Analysis using 'JAGS'

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Documentation for package ‘bnma’ version 1.6.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

bnma-package	bnma: A package for network meta analysis using Bayesian methods
blocker	Beta blockers to prevent mortality after myocardial infarction
calculate.contrast.deviance	Find deviance statistics such as DIC and pD.
calculate.deviance	Find deviance statistics such as DIC and pD.
cardiovascular	Trials of low dose and high dose statins for cardiovascular disease vs. placebo
certolizumab	Trials of certolizumab pegol (CZP) for the treatment of rheumatoid arthritis in patients
contrast.network.data	Make a network object for contrast-level data containing data, priors, and a JAGS model file
contrast.network.deviance.plot	Make a contrast network deviance plot
contrast.network.leverage.plot	Make a leverage plot
contrast.network.run	Run the model using the network object
draw.network.graph	Draws network graph using igraph package
network.autocorr.diag	Generate autocorrelation diagnostics using coda package
network.autocorr.plot	Generate autocorrelation plot using coda package
network.covariate.plot	Make a covariate plot
network.cumrank.tx.plot	Create a treatment cumulative rank plot
network.data	Make a network object containing data, priors, and a JAGS model file
network.deviance.plot	Make a deviance plot
network.forest.plot	Draws forest plot
network.gelman.diag	Use coda package to find Gelman-Rubin diagnostics
network.gelman.plot	Use coda package to plot Gelman-Rubin diagnostic plot
network.inconsistency.plot	Plotting comparison of posterior mean deviance in the consistency model and inconsistency model
network.leverage.plot	Make a leverage plot
network.rank.tx.plot	Create a treatment rank plot
network.run	Run the model using the network object
nodesplit.network.data	Make a network object containing data, priors, and a JAGS model file
nodesplit.network.run	Run the model using the nodesplit network object
parkinsons	Dopamine agonists as adjunct therapy in Parkinson's disease
parkinsons_contrast	Dopamine agonists as adjunct therapy in Parkinson's disease
plot.contrast.network.result	Plot traceplot and posterior density of the result using contrast data
plot.network.result	Plot traceplot and posterior density of the result
plot.ume.network.result	Plot traceplot and posterior density of the result using contrast data
rank.tx	Create a treatment rank table
relative.effects	Find relative effects for base treatment and comparison treatments
relative.effects.table	Make a summary table for relative effects
smoking	Smoking cessation counseling programs
statins	Trials of statins for cholesterol lowering vs. placebo or usual care
sucra	Calculate SUCRA
summary.contrast.network.result	Summarize result run by 'contrast.network.run'
summary.network.result	Summarize result run by 'network.run'
summary.nodesplit.network.result	Summarize result run by 'nodesplit.network.run'
summary.ume.network.result	Summarize result run by 'ume.network.run'
thrombolytic	Thrombolytic drugs and percutaneous transluminal coronary angioplasty
ume.network.data	Make a network object for the unrelated mean effects model (inconsistency model) containing data, priors, and a JAGS model file
ume.network.run	Run the model using the network object
variance.tx.effects	Calculate correlation matrix for multinomial heterogeneity parameter.