do_dunn_test |
internal function |
filter_genes_TSP |
Filter genes/features for multiclass one-vs-rest classifier downstream training |
group_TSP |
Internal function: for grouping labels for one-vs-rest usage |
optimize_RF |
Optimize parameters to be used in training the final RF model |
plot_binary_RF |
Plot binary rule-based heatmaps |
plot_binary_TSP |
Plot binary rule-based heatmaps |
predict_one_vs_rest_TSP |
Predict sample class based on one-vs-rest multiclass top score pairs classifier |
predict_RF |
Predict sample class based on gene pair-based random forest classifier |
print-method |
Methods for Function 'print' in Package 'multiclassPairs' |
print-methods |
Methods for Function 'print' in Package 'multiclassPairs' |
proximity_matrix_RF |
Plot binary rule-based heatmaps |
ReadData |
Function for preparing data object |
sort_genes_RF |
Sort genes/features for pair-based random forest classifier downstream steps |
sort_rules_RF |
Create and sort feature/gene pairs for pair-based random forest classifier training step |
summary_genes_RF |
Summarize sorted genes to rules |
train_one_vs_rest_TSP |
Build multiclass rule-based classifier as one-vs-rest scheme |
train_RF |
Train pair-based random forest model |